Analysis of interatomic Contacts of Structural Units in PDB entry:
6VG1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VG1 entry

There are 2 chains in PDB entry 6VG1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	HIS 642
B	LYS 1	LEU 20

There are 16 helices in PDB entry 6VG1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed alpha
Helix 2	AA2	A	59	64	Right-handed alpha
Helix 3	AA3	A	132	135	Right-handed 310
Helix 4	AA4	A	241	245	Right-handed 310
Helix 5	AA5	A	256	262	Right-handed alpha
Helix 6	AA6	A	355	359	Right-handed 310
Helix 7	AA7	A	460	464	Right-handed 310
Helix 8	AA8	A	575	580	Right-handed 310
Helix 9	AA9	B	20	24	Right-handed alpha
Helix 10	AB1	B	59	64	Right-handed alpha
Helix 11	AB2	B	132	135	Right-handed 310
Helix 12	AB3	B	241	245	Right-handed 310
Helix 13	AB4	B	256	262	Right-handed alpha
Helix 14	AB5	B	355	359	Right-handed 310
Helix 15	AB6	B	460	464	Right-handed 310
Helix 16	AB7	B	575	580	Right-handed 310

There are 33 sheets in PDB entry 6VG1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	83	94	parallel
Strand 3	A	71	80	anti-parallel
Strand 4	A	33	34	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	51	54	anti-parallel
Strand 3	A	43	45	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	113	first strand
Strand 2	A	193	203	parallel
Strand 3	A	177	186	anti-parallel
Strand 4	A	137	142	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	148	154	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	236	237	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	222	first strand
Strand 2	A	301	311	parallel
Strand 3	A	285	294	anti-parallel
Strand 4	A	247	251	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	233	first strand
Strand 2	A	271	274	anti-parallel
Strand 3	A	263	265	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	324	first strand
Strand 2	A	344	351	anti-parallel
Strand 3	A	380	385	anti-parallel
Strand 4	A	371	377	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	336	first strand
Strand 2	A	412	422	parallel
Strand 3	A	396	405	anti-parallel
Strand 4	A	361	366	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	431	first strand
Strand 2	A	455	456	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	441	first strand
Strand 2	A	522	532	parallel
Strand 3	A	506	515	anti-parallel
Strand 4	A	466	470	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	452	first strand
Strand 2	A	492	495	anti-parallel
Strand 3	A	484	486	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	475	first strand
Strand 2	A	478	479	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	543	first strand
Strand 2	A	569	571	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	556	first strand
Strand 2	A	631	641	parallel
Strand 3	A	619	623	anti-parallel
Strand 4	A	582	586	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	556	first strand
Strand 2	A	631	641	parallel
Strand 3	A	616	617	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	596	first strand
Strand 2	A	601	604	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	8	first strand
Strand 2	B	83	94	parallel
Strand 3	B	71	80	anti-parallel
Strand 4	B	33	34	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	51	54	anti-parallel
Strand 3	B	43	46	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	113	first strand
Strand 2	B	193	203	parallel
Strand 3	B	177	186	anti-parallel
Strand 4	B	137	140	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	151	154	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	236	237	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	222	first strand
Strand 2	B	301	311	parallel
Strand 3	B	285	294	anti-parallel
Strand 4	B	247	251	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	233	first strand
Strand 2	B	271	274	anti-parallel
Strand 3	B	263	265	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	324	first strand
Strand 2	B	344	351	anti-parallel
Strand 3	B	380	385	anti-parallel
Strand 4	B	371	377	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	336	first strand
Strand 2	B	412	422	parallel
Strand 3	B	396	405	anti-parallel
Strand 4	B	361	366	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	431	first strand
Strand 2	B	455	456	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	441	first strand
Strand 2	B	522	532	parallel
Strand 3	B	506	515	anti-parallel
Strand 4	B	466	470	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	452	first strand
Strand 2	B	492	495	anti-parallel
Strand 3	B	484	486	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	475	first strand
Strand 2	B	478	479	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	543	first strand
Strand 2	B	569	571	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	556	first strand
Strand 2	B	631	641	parallel
Strand 3	B	620	623	anti-parallel
Strand 4	B	582	585	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	567	first strand
Strand 2	B	601	604	anti-parallel
Strand 3	B	593	596	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VG1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VG1