Analysis of interatomic Contacts of Structural Units in PDB entry:
6VG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VG3 entry

There are 3 chains in PDB entry 6VG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 788SER 1064
B
 LYS 788VAL 1066
C
 MET 789ASP 1063
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6VG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
792 794Right-handed 310
Helix 2
AA2
A
836 853Right-handed alpha
Helix 3
AA3
A
883 891Right-handed alpha
Helix 4
AA4
A
903 924Right-handed alpha
Helix 5
AA5
A
932 934Right-handed 310
Helix 6
AA6
A
956 960Right-handed 310
Helix 7
AA7
A
969 973Right-handed 310
Helix 8
AA8
A
974 981Right-handed alpha
Helix 9
AA9
A
984 1001Right-handed alpha
Helix 10
AB1
A
1011 1021Right-handed alpha
Helix 11
AB2
A
1033 1044Right-handed alpha
Helix 12
AB3
A
1047 1051Right-handed 310
Helix 13
AB4
A
1053 1063Right-handed alpha
Helix 14
AB5
B
792 794Right-handed 310
Helix 15
AB6
B
836 853Right-handed alpha
Helix 16
AB7
B
882 891Right-handed alpha
Helix 17
AB8
B
903 924Right-handed alpha
Helix 18
AB9
B
932 934Right-handed 310
Helix 19
AC1
B
956 960Right-handed 310
Helix 20
AC2
B
969 973Right-handed 310
Helix 21
AC3
B
974 981Right-handed alpha
Helix 22
AC4
B
984 1001Right-handed alpha
Helix 23
AC5
B
1011 1021Right-handed alpha
Helix 24
AC6
B
1033 1044Right-handed alpha
Helix 25
AC7
B
1047 1051Right-handed 310
Helix 26
AC8
B
1053 1065Right-handed alpha
Helix 27
AC9
C
792 794Right-handed 310
Helix 28
AD1
C
836 852Right-handed alpha
Helix 29
AD2
C
883 891Right-handed alpha
Helix 30
AD3
C
903 924Right-handed alpha
Helix 31
AD4
C
932 934Right-handed 310
Helix 32
AD5
C
956 960Right-handed 310
Helix 33
AD6
C
969 973Right-handed 310
Helix 34
AD7
C
974 981Right-handed alpha
Helix 35
AD8
C
984 1001Right-handed alpha
Helix 36
AD9
C
1011 1021Right-handed alpha
Helix 37
AE1
C
1033 1044Right-handed alpha
Helix 38
AE2
C
1047 1051Right-handed 310
Helix 39
AE3
C
1053 1063Right-handed alpha
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There are 9 sheets in PDB entry 6VG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 804first strand
Strand 2
A
809 816anti-parallel
Strand 3
A
824 832anti-parallel
Strand 4
A
871 876anti-parallel
Strand 5
A
861 865anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
881 882first strand
Strand 2
A
936 938anti-parallel
Strand 3
A
944 946anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
961 963first strand
Strand 2
A
966 968anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
796 804first strand
Strand 2
B
809 816anti-parallel
Strand 3
B
824 832anti-parallel
Strand 4
B
871 876anti-parallel
Strand 5
B
861 865anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
936 938first strand
Strand 2
B
944 946anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
961 962first strand
Strand 2
B
967 968anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
796 804first strand
Strand 2
C
809 816anti-parallel
Strand 3
C
824 832anti-parallel
Strand 4
C
871 876anti-parallel
Strand 5
C
861 865anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
881 882first strand
Strand 2
C
936 938anti-parallel
Strand 3
C
944 946anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
961 963first strand
Strand 2
C
966 968anti-parallel
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