Analysis of interatomic Contacts of Structural Units in PDB entry:
6VGG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VGG entry

There are 5 chains in PDB entry 6VGG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 305	HIS 402
B	C 1	C 16
C	G 2	G 17
D	ALA 111	PRO 227
G	PRO 2	ALA 139

There are 9 helices in PDB entry 6VGG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	313	322	Right-handed alpha
Helix 2	AA2	A	323	327	Right-handed 310
Helix 3	AA3	A	343	356	Right-handed alpha
Helix 4	AA4	A	361	376	Right-handed alpha
Helix 5	AA5	A	391	396	Right-handed alpha
Helix 6	AA6	G	7	13	Right-handed alpha
Helix 7	AA7	G	15	20	Right-handed alpha
Helix 8	AA8	G	36	51	Right-handed alpha
Helix 9	AA9	G	128	137	Right-handed alpha

There are 7 sheets in PDB entry 6VGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	388	390	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	121	124	anti-parallel
Strand 3	D	140	144	anti-parallel
Strand 4	D	179	182	anti-parallel
Strand 5	D	172	176	anti-parallel
Strand 6	D	153	157	anti-parallel
Strand 7	D	200	201	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	218	220	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	169	first strand
Strand 2	D	186	187	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	210	first strand
Strand 2	G	102	103	parallel
Strand 3	G	106	107	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	67	first strand
Strand 2	G	52	57	anti-parallel
Strand 3	G	25	29	anti-parallel
Strand 4	G	120	123	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	95	first strand
Strand 2	G	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VGG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VGG