Analysis of interatomic Contacts of Structural Units in PDB entry:
6VGL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VGL entry

There are 8 chains in PDB entry 6VGL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 843	GLU 1006
D	TYR 1008	ALA 1131
B	LEU 835	GLU 1006
B	TYR 1008	GLY 1132
C	GLN 843	GLU 1006
C	TYR 1008	ALA 1131
A	HIS 828	GLU 1006
A	TYR 1008	GLY 1132

There are 58 helices in PDB entry 6VGL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	845	847	Right-handed 310
Helix 2	AA2	D	888	904	Right-handed alpha
Helix 3	AA3	D	936	944	Right-handed alpha
Helix 4	AA4	D	945	948	Right-handed 310
Helix 5	AA5	D	949	970	Right-handed alpha
Helix 6	AA6	D	978	980	Right-handed 310
Helix 7	AA7	D	1017	1021	Right-handed 310
Helix 8	AA8	D	1022	1029	Right-handed alpha
Helix 9	AA9	D	1032	1049	Right-handed alpha
Helix 10	AB1	D	1052	1055	Right-handed 310
Helix 11	AB2	D	1056	1066	Right-handed alpha
Helix 12	AB3	D	1070	1084	Right-handed alpha
Helix 13	AB4	D	1095	1106	Right-handed alpha
Helix 14	AB5	D	1109	1113	Right-handed 310
Helix 15	AB6	D	1115	1131	Right-handed alpha
Helix 16	AB7	B	845	847	Right-handed 310
Helix 17	AB8	B	888	904	Right-handed alpha
Helix 18	AB9	B	936	944	Right-handed alpha
Helix 19	AC1	B	949	970	Right-handed alpha
Helix 20	AC2	B	978	980	Right-handed 310
Helix 21	AC3	B	1017	1021	Right-handed 310
Helix 22	AC4	B	1022	1029	Right-handed alpha
Helix 23	AC5	B	1032	1050	Right-handed alpha
Helix 24	AC6	B	1052	1055	Right-handed 310
Helix 25	AC7	B	1056	1066	Right-handed alpha
Helix 26	AC8	B	1071	1084	Right-handed alpha
Helix 27	AC9	B	1095	1106	Right-handed alpha
Helix 28	AD1	B	1109	1113	Right-handed 310
Helix 29	AD2	B	1115	1131	Right-handed alpha
Helix 30	AD3	C	845	847	Right-handed 310
Helix 31	AD4	C	888	905	Right-handed alpha
Helix 32	AD5	C	936	944	Right-handed alpha
Helix 33	AD6	C	945	948	Right-handed 310
Helix 34	AD7	C	949	970	Right-handed alpha
Helix 35	AD8	C	978	980	Right-handed 310
Helix 36	AD9	C	1017	1021	Right-handed 310
Helix 37	AE1	C	1022	1029	Right-handed alpha
Helix 38	AE2	C	1032	1049	Right-handed alpha
Helix 39	AE3	C	1052	1055	Right-handed 310
Helix 40	AE4	C	1056	1066	Right-handed alpha
Helix 41	AE5	C	1071	1084	Right-handed alpha
Helix 42	AE6	C	1095	1106	Right-handed alpha
Helix 43	AE7	C	1109	1113	Right-handed 310
Helix 44	AE8	C	1115	1131	Right-handed alpha
Helix 45	AE9	A	845	847	Right-handed 310
Helix 46	AF1	A	888	904	Right-handed alpha
Helix 47	AF2	A	936	944	Right-handed alpha
Helix 48	AF3	A	949	970	Right-handed alpha
Helix 49	AF4	A	978	980	Right-handed 310
Helix 50	AF5	A	1017	1021	Right-handed 310
Helix 51	AF6	A	1022	1029	Right-handed alpha
Helix 52	AF7	A	1032	1049	Right-handed alpha
Helix 53	AF8	A	1052	1055	Right-handed 310
Helix 54	AF9	A	1056	1066	Right-handed alpha
Helix 55	AG1	A	1071	1084	Right-handed alpha
Helix 56	AG2	A	1095	1106	Right-handed alpha
Helix 57	AG3	A	1109	1113	Right-handed 310
Helix 58	AG4	A	1115	1132	Right-handed alpha

There are 17 sheets in PDB entry 6VGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	849	858	first strand
Strand 2	D	861	868	anti-parallel
Strand 3	D	877	884	anti-parallel
Strand 4	D	923	930	anti-parallel
Strand 5	D	913	919	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	972	973	first strand
Strand 2	D	999	1000	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	982	986	first strand
Strand 2	D	989	992	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1008	1009	first strand
Strand 2	D	1030	1031	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	844	first strand
Strand 2	B	913	919	parallel
Strand 3	B	923	930	anti-parallel
Strand 4	B	877	884	anti-parallel
Strand 5	B	861	868	anti-parallel
Strand 6	B	849	857	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	972	973	first strand
Strand 2	B	999	1000	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	982	986	first strand
Strand 2	B	989	992	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1008	1009	first strand
Strand 2	B	1030	1031	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1016	first strand
Strand 2	A	837	839	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	857	first strand
Strand 2	C	861	868	anti-parallel
Strand 3	C	877	884	anti-parallel
Strand 4	C	923	930	anti-parallel
Strand 5	C	913	919	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	972	973	first strand
Strand 2	C	999	1000	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	982	986	first strand
Strand 2	C	989	992	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1008	1009	first strand
Strand 2	C	1030	1031	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	844	first strand
Strand 2	A	913	919	parallel
Strand 3	A	923	930	anti-parallel
Strand 4	A	878	884	anti-parallel
Strand 5	A	861	868	anti-parallel
Strand 6	A	849	857	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	972	973	first strand
Strand 2	A	999	1000	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	982	986	first strand
Strand 2	A	989	992	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1008	1009	first strand
Strand 2	A	1030	1031	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VGL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VGL