Analysis of interatomic Contacts of Structural Units in PDB entry:
6VGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VGO entry

There is 1 chain in PDB entry 6VGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 78TYR 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6VGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 91Right-handed alpha
Helix 2
AA2
A
99 109Right-handed alpha
Helix 3
AA3
A
111 115Right-handed 310
Helix 4
AA4
A
126 133Right-handed alpha
Helix 5
AA5
A
145 149Right-handed 310
Helix 6
AA6
A
152 171Right-handed alpha
Helix 7
AA7
A
179 186Right-handed alpha
Helix 8
AA8
A
198 202Right-handed 310
Helix 9
AA9
A
204 214Right-handed alpha
Helix 10
AB1
A
234 238Right-handed 310
Helix 11
AB2
A
248 262Right-handed alpha
Helix 12
AB3
A
271 282Right-handed alpha
Helix 13
AB4
A
304 315Right-handed alpha
Helix 14
AB5
A
334 349Right-handed alpha
Helix 15
AB6
A
350 352Right-handed 310
Helix 16
AB7
A
372 374Right-handed 310
Helix 17
AB8
A
375 386Right-handed alpha
Helix 18
AB9
A
389 398Right-handed alpha
Helix 19
AC1
A
398 415Right-handed alpha
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There are 3 sheets in PDB entry 6VGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
135 143parallel
Strand 3
A
189 196parallel
Strand 4
A
174 176parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
135 143parallel
Strand 3
A
189 196parallel
Strand 4
A
216 220parallel
Strand 5
A
264 266parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 291first strand
Strand 2
A
317 320parallel
Strand 3
A
354 356parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il