Analysis of interatomic Contacts of Structural Units in PDB entry:
6VGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VGR entry

There are 6 chains in PDB entry 6VGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 78	TYR 427
B	LEU 78	TYR 427
C	GLN 1	PRO 223
D	GLU 1	GLU 217
H	GLN 1	PRO 223
L	GLU 1	GLU 217

There are 58 helices in PDB entry 6VGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	91	Right-handed alpha
Helix 2	AA2	A	99	109	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	126	133	Right-handed alpha
Helix 5	AA5	A	145	149	Right-handed 310
Helix 6	AA6	A	152	170	Right-handed alpha
Helix 7	AA7	A	179	186	Right-handed alpha
Helix 8	AA8	A	198	202	Right-handed 310
Helix 9	AA9	A	204	214	Right-handed alpha
Helix 10	AB1	A	234	238	Right-handed 310
Helix 11	AB2	A	248	262	Right-handed alpha
Helix 12	AB3	A	271	282	Right-handed alpha
Helix 13	AB4	A	304	315	Right-handed alpha
Helix 14	AB5	A	326	330	Right-handed 310
Helix 15	AB6	A	334	349	Right-handed alpha
Helix 16	AB7	A	350	352	Right-handed 310
Helix 17	AB8	A	372	374	Right-handed 310
Helix 18	AB9	A	375	386	Right-handed alpha
Helix 19	AC1	A	389	398	Right-handed alpha
Helix 20	AC2	A	398	415	Right-handed alpha
Helix 21	AC3	B	79	91	Right-handed alpha
Helix 22	AC4	B	99	109	Right-handed alpha
Helix 23	AC5	B	126	133	Right-handed alpha
Helix 24	AC6	B	145	149	Right-handed 310
Helix 25	AC7	B	152	170	Right-handed alpha
Helix 26	AC8	B	179	186	Right-handed alpha
Helix 27	AC9	B	198	202	Right-handed 310
Helix 28	AD1	B	204	214	Right-handed alpha
Helix 29	AD2	B	234	238	Right-handed 310
Helix 30	AD3	B	248	262	Right-handed alpha
Helix 31	AD4	B	271	282	Right-handed alpha
Helix 32	AD5	B	304	315	Right-handed alpha
Helix 33	AD6	B	326	330	Right-handed 310
Helix 34	AD7	B	334	349	Right-handed alpha
Helix 35	AD8	B	350	352	Right-handed 310
Helix 36	AD9	B	372	374	Right-handed 310
Helix 37	AE1	B	375	386	Right-handed alpha
Helix 38	AE2	B	389	398	Right-handed alpha
Helix 39	AE3	B	398	415	Right-handed alpha
Helix 40	AE4	C	28	30	Right-handed 310
Helix 41	AE5	C	62	65	Right-handed 310
Helix 42	AE6	C	87	91	Right-handed 310
Helix 43	AE7	C	105	109	Right-handed 310
Helix 44	AE8	C	197	199	Right-handed 310
Helix 45	AE9	C	211	214	Right-handed 310
Helix 46	AF1	D	83	87	Right-handed 310
Helix 47	AF2	D	125	132	Right-handed alpha
Helix 48	AF3	D	186	191	Right-handed alpha
Helix 49	AF4	H	28	30	Right-handed 310
Helix 50	AF5	H	62	65	Right-handed 310
Helix 51	AF6	H	87	91	Right-handed 310
Helix 52	AF7	H	105	109	Right-handed 310
Helix 53	AF8	H	166	168	Right-handed 310
Helix 54	AF9	H	197	199	Right-handed 310
Helix 55	AG1	H	211	214	Right-handed 310
Helix 56	AG2	L	80	84	Right-handed 310
Helix 57	AG3	L	125	132	Right-handed alpha
Helix 58	AG4	L	187	192	Right-handed alpha

There are 30 sheets in PDB entry 6VGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	135	143	parallel
Strand 3	A	189	196	parallel
Strand 4	A	174	176	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	135	143	parallel
Strand 3	A	189	196	parallel
Strand 4	A	216	220	parallel
Strand 5	A	264	266	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	287	293	parallel
Strand 3	A	317	320	parallel
Strand 4	A	354	356	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	135	143	parallel
Strand 3	B	189	196	parallel
Strand 4	B	174	176	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	135	143	parallel
Strand 3	B	189	196	parallel
Strand 4	B	216	220	parallel
Strand 5	B	264	266	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	291	first strand
Strand 2	B	317	320	parallel
Strand 3	B	354	356	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	117	120	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	117	120	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	112	113	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	150	155	anti-parallel
Strand 3	C	186	195	anti-parallel
Strand 4	C	173	175	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	186	195	anti-parallel
Strand 3	C	179	180	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	164	first strand
Strand 2	C	204	209	anti-parallel
Strand 3	C	216	221	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	66	71	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	110	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	49	53	anti-parallel
Strand 3	D	37	42	anti-parallel
Strand 4	D	89	94	anti-parallel
Strand 5	D	101	102	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	134	143	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	165	167	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	195	201	anti-parallel
Strand 3	D	209	210	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	195	201	anti-parallel
Strand 3	D	213	214	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	112	113	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	186	195	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	186	195	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	205	210	anti-parallel
Strand 3	H	215	220	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	133	143	anti-parallel
Strand 3	L	177	186	anti-parallel
Strand 4	L	163	167	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	158	first strand
Strand 2	L	149	154	anti-parallel
Strand 3	L	195	201	anti-parallel
Strand 4	L	209	210	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	158	first strand
Strand 2	L	149	154	anti-parallel
Strand 3	L	195	201	anti-parallel
Strand 4	L	213	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VGR