Analysis of interatomic Contacts of Structural Units in PDB entry:
6VGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VGU entry

There is 1 chain in PDB entry 6VGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 740LYS 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6VGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 36Right-handed alpha
Helix 2
AA2
A
37 40Right-handed 310
Helix 3
AA3
A
43 45Right-handed 310
Helix 4
AA4
A
55 59Right-handed 310
Helix 5
AA5
A
68 72Right-handed 310
Helix 6
AA6
A
107 119Right-handed alpha
Helix 7
AA7
A
180 184Right-handed 310
Helix 8
AA8
A
208 225Right-handed alpha
Helix 9
AA9
A
231 247Right-handed alpha
Helix 10
AB1
A
261 265Right-handed 310
Helix 11
AB2
A
275 285Right-handed alpha
Helix 12
AB3
A
290 305Right-handed alpha
Helix 13
AB4
A
354 356Right-handed 310
Helix 14
AB5
A
370 374Right-handed 310
Helix 15
AB6
A
384 402Right-handed alpha
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There are 5 sheets in PDB entry 6VGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
4 10anti-parallel
Strand 3
A
78 83parallel
Strand 4
A
47 51anti-parallel
Strand 5
A
60 61anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
98 103anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
192 195anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 317first strand
Strand 2
A
326 332anti-parallel
Strand 3
A
336 340anti-parallel
Strand 4
A
347 352anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 361first strand
Strand 2
A
365 369anti-parallel
Strand 3
A
378 381anti-parallel
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