Analysis of interatomic Contacts of Structural Units in PDB entry:
6VH5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VH5 entry

There are 4 chains in PDB entry 6VH5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	GLY 280
B	MET 1	GLY 280
C	MET 1	ARG 279
D	PRO -2	ARG 279

There are 43 helices in PDB entry 6VH5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	24	Right-handed alpha
Helix 2	AA2	A	34	44	Right-handed alpha
Helix 3	AA3	A	64	72	Right-handed alpha
Helix 4	AA4	A	95	99	Right-handed 310
Helix 5	AA5	A	105	110	Right-handed alpha
Helix 6	AA6	A	112	119	Right-handed alpha
Helix 7	AA7	A	128	140	Right-handed alpha
Helix 8	AA8	A	149	156	Right-handed alpha
Helix 9	AA9	A	207	220	Right-handed alpha
Helix 10	AB1	A	250	263	Right-handed alpha
Helix 11	AB2	A	276	280	Right-handed 310
Helix 12	AB3	B	14	24	Right-handed alpha
Helix 13	AB4	B	34	44	Right-handed alpha
Helix 14	AB5	B	64	72	Right-handed alpha
Helix 15	AB6	B	95	99	Right-handed 310
Helix 16	AB7	B	105	112	Right-handed alpha
Helix 17	AB8	B	112	120	Right-handed alpha
Helix 18	AB9	B	128	140	Right-handed alpha
Helix 19	AC1	B	149	156	Right-handed alpha
Helix 20	AC2	B	207	220	Right-handed alpha
Helix 21	AC3	B	250	264	Right-handed alpha
Helix 22	AC4	B	276	280	Right-handed 310
Helix 23	AC5	C	14	24	Right-handed alpha
Helix 24	AC6	C	34	44	Right-handed alpha
Helix 25	AC7	C	64	72	Right-handed alpha
Helix 26	AC8	C	95	99	Right-handed 310
Helix 27	AC9	C	106	111	Right-handed alpha
Helix 28	AD1	C	112	119	Right-handed alpha
Helix 29	AD2	C	128	140	Right-handed alpha
Helix 30	AD3	C	149	156	Right-handed alpha
Helix 31	AD4	C	207	220	Right-handed alpha
Helix 32	AD5	C	250	264	Right-handed alpha
Helix 33	AD6	D	14	24	Right-handed alpha
Helix 34	AD7	D	34	44	Right-handed alpha
Helix 35	AD8	D	64	69	Right-handed alpha
Helix 36	AD9	D	70	72	Right-handed 310
Helix 37	AE1	D	95	99	Right-handed 310
Helix 38	AE2	D	105	112	Right-handed alpha
Helix 39	AE3	D	112	119	Right-handed alpha
Helix 40	AE4	D	128	140	Right-handed alpha
Helix 41	AE5	D	149	157	Right-handed alpha
Helix 42	AE6	D	207	220	Right-handed alpha
Helix 43	AE7	D	250	264	Right-handed alpha

There are 12 sheets in PDB entry 6VH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	5	9	parallel
Strand 3	A	49	56	parallel
Strand 4	A	172	179	anti-parallel
Strand 5	A	75	83	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	101	104	parallel
Strand 3	A	144	148	parallel
Strand 4	A	87	90	anti-parallel
Strand 5	A	159	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	230	first strand
Strand 2	A	237	245	anti-parallel
Strand 3	A	194	203	anti-parallel
Strand 4	A	265	274	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	5	9	parallel
Strand 3	B	49	56	parallel
Strand 4	B	172	179	anti-parallel
Strand 5	B	75	83	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	125	first strand
Strand 2	B	101	104	parallel
Strand 3	B	144	148	parallel
Strand 4	B	87	90	anti-parallel
Strand 5	B	159	162	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	230	first strand
Strand 2	B	237	245	anti-parallel
Strand 3	B	194	203	anti-parallel
Strand 4	B	265	274	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	5	9	parallel
Strand 3	C	49	56	parallel
Strand 4	C	172	179	anti-parallel
Strand 5	C	75	83	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	101	105	parallel
Strand 3	C	144	148	parallel
Strand 4	C	87	90	anti-parallel
Strand 5	C	159	162	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	230	first strand
Strand 2	C	237	245	anti-parallel
Strand 3	C	194	203	anti-parallel
Strand 4	C	265	274	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	5	9	parallel
Strand 3	D	49	56	parallel
Strand 4	D	172	179	anti-parallel
Strand 5	D	75	83	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	125	first strand
Strand 2	D	101	104	parallel
Strand 3	D	144	148	parallel
Strand 4	D	87	90	anti-parallel
Strand 5	D	159	162	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	230	first strand
Strand 2	D	237	245	anti-parallel
Strand 3	D	194	203	anti-parallel
Strand 4	D	265	274	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VH5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VH5