Analysis of interatomic Contacts of Structural Units in PDB entry:
6VHA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VHA entry

There are 3 chains in PDB entry 6VHA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 LYS 274GLU 380
F
 LYS 274GLU 380
G
 LYS 274GLU 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 6VHA

There are 8 sheets in PDB entry 6VHA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
275 282first strand
Strand 2
F
275 282parallel
Strand 3
G
275 282parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
285 299first strand
Strand 2
F
285 299parallel
Strand 3
G
285 299parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
303 310first strand
Strand 2
F
303 310parallel
Strand 3
G
303 310parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
313 321first strand
Strand 2
F
313 321parallel
Strand 3
G
313 321parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
327 330first strand
Strand 2
F
327 330parallel
Strand 3
G
327 330parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
336 346first strand
Strand 2
F
336 346parallel
Strand 3
G
336 346parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
349 362first strand
Strand 2
F
349 362parallel
Strand 3
G
349 362parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
369 379first strand
Strand 2
F
369 379parallel
Strand 3
G
369 379parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il