Analysis of interatomic Contacts of Structural Units in PDB entry:
6VHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VHH entry

There are 2 chains in PDB entry 6VHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 905GLU 2644
B
 VAL 29TYR 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6VHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1086 1088Right-handed 310
Helix 2
AA2
A
1216 1220Right-handed 310
Helix 3
AA3
A
1411 1415Right-handed 310
Helix 4
AA4
A
2284 2288Right-handed 310
Helix 5
AA5
A
2315 2322Right-handed 310
Helix 6
AA6
A
2334 2338Right-handed 310
Helix 7
AA7
A
2345 2349Right-handed 310
Helix 8
AA8
A
2353 2360Right-handed alpha
Helix 9
AA9
A
2363 2367Right-handed 310
Helix 10
AB1
A
2382 2390Right-handed alpha
Helix 11
AB2
A
2398 2412Right-handed alpha
Helix 12
AB3
A
2464 2475Right-handed alpha
Helix 13
AB4
A
2500 2509Right-handed alpha
Helix 14
AB5
A
2558 2561Right-handed 310
Helix 15
AB6
A
2562 2592Right-handed alpha
Helix 16
AB7
A
2602 2610Right-handed alpha
Helix 17
AB8
A
2627 2631Right-handed 310
Helix 18
AB9
A
2633 2635Right-handed 310
Helix 19
AC1
B
69 74Right-handed alpha
Helix 20
AC2
B
82 91Right-handed alpha
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There are 23 sheets in PDB entry 6VHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
911 914first strand
Strand 2
A
964 967anti-parallel
Strand 3
A
1002 1004anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
930 931first strand
Strand 2
A
936 942anti-parallel
Strand 3
A
949 953anti-parallel
Strand 4
A
1061 1062anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
991 996first strand
Strand 2
A
977 986anti-parallel
Strand 3
A
1019 1031anti-parallel
Strand 4
A
1039 1050anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1067 1069first strand
Strand 2
A
1074 1076anti-parallel
Strand 3
A
1082 1084anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1091 1096first strand
Strand 2
A
1441 1445anti-parallel
Strand 3
A
1431 1435anti-parallel
Strand 4
A
1420 1425anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1111 1112first strand
Strand 2
A
1148 1154anti-parallel
Strand 3
A
1139 1143anti-parallel
Strand 4
A
1132 1135anti-parallel
Strand 5
A
1123 1126anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1163 1167first strand
Strand 2
A
1174 1178anti-parallel
Strand 3
A
1183 1186anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1233 1237first strand
Strand 2
A
1243 1246anti-parallel
Strand 3
A
1251 1254anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1294 1295first strand
Strand 2
A
1303 1306anti-parallel
Strand 3
A
1310 1314anti-parallel
Strand 4
A
1320 1325anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1351 1356first strand
Strand 2
A
1362 1367anti-parallel
Strand 3
A
1373 1378anti-parallel
Strand 4
A
1384 1388anti-parallel
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There are 48 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1457 1461first strand
Strand 2
A
1466 1470anti-parallel
Strand 3
A
1476 1481anti-parallel
Strand 4
A
1487 1493anti-parallel
Strand 5
A
1499 1503anti-parallel
Strand 6
A
1509 1514anti-parallel
Strand 7
A
1520 1524anti-parallel
Strand 8
A
1530 1535anti-parallel
Strand 9
A
1541 1545anti-parallel
Strand 10
A
1550 1557anti-parallel
Strand 11
A
1560 1566anti-parallel
Strand 12
A
1574 1578anti-parallel
Strand 13
A
1584 1588anti-parallel
Strand 14
A
1594 1601anti-parallel
Strand 15
A
1605 1611anti-parallel
Strand 16
A
1617 1624anti-parallel
Strand 17
A
1628 1635anti-parallel
Strand 18
A
1638 1645anti-parallel
Strand 19
A
1650 1653anti-parallel
Strand 20
A
1659 1667anti-parallel
Strand 21
A
1671 1683anti-parallel
Strand 22
A
1690 1702anti-parallel
Strand 23
A
1705 1715anti-parallel
Strand 24
A
1718 1726anti-parallel
Strand 25
A
1731 1736anti-parallel
Strand 26
A
1742 1747anti-parallel
Strand 27
A
1753 1757anti-parallel
Strand 28
A
1765 1769anti-parallel
Strand 29
A
1775 1780anti-parallel
Strand 30
A
1783 1789anti-parallel
Strand 31
A
1795 1800anti-parallel
Strand 32
A
1805 1809anti-parallel
Strand 33
A
1816 1818anti-parallel
Strand 34
A
1824 1829anti-parallel
Strand 35
A
1835 1839anti-parallel
Strand 36
A
1845 1853anti-parallel
Strand 37
A
1856 1862anti-parallel
Strand 38
A
1870 1874anti-parallel
Strand 39
A
1880 1885anti-parallel
Strand 40
A
1890 1896anti-parallel
Strand 41
A
1902 1907anti-parallel
Strand 42
A
1910 1916anti-parallel
Strand 43
A
1923 1930anti-parallel
Strand 44
A
1933 1942anti-parallel
Strand 45
A
1945 1953anti-parallel
Strand 46
A
1961 1967anti-parallel
Strand 47
A
1974 1981anti-parallel
Strand 48
A
1984 1985anti-parallel
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There are 58 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1457 1461first strand
Strand 2
A
1466 1470anti-parallel
Strand 3
A
1476 1481anti-parallel
Strand 4
A
1487 1493anti-parallel
Strand 5
A
1499 1503anti-parallel
Strand 6
A
1509 1514anti-parallel
Strand 7
A
1520 1524anti-parallel
Strand 8
A
1530 1535anti-parallel
Strand 9
A
1541 1545anti-parallel
Strand 10
A
1550 1557anti-parallel
Strand 11
A
1560 1566anti-parallel
Strand 12
A
1574 1578anti-parallel
Strand 13
A
1584 1588anti-parallel
Strand 14
A
1594 1601anti-parallel
Strand 15
A
1605 1611anti-parallel
Strand 16
A
1617 1624anti-parallel
Strand 17
A
1628 1635anti-parallel
Strand 18
A
1638 1645anti-parallel
Strand 19
A
1650 1653anti-parallel
Strand 20
A
1659 1667anti-parallel
Strand 21
A
1671 1683anti-parallel
Strand 22
A
1690 1702anti-parallel
Strand 23
A
1705 1715anti-parallel
Strand 24
A
1718 1726anti-parallel
Strand 25
A
1731 1736anti-parallel
Strand 26
A
1742 1747anti-parallel
Strand 27
A
1753 1757anti-parallel
Strand 28
A
1765 1769anti-parallel
Strand 29
A
1775 1780anti-parallel
Strand 30
A
1783 1789anti-parallel
Strand 31
A
1795 1800anti-parallel
Strand 32
A
1805 1809anti-parallel
Strand 33
A
1816 1818anti-parallel
Strand 34
A
1824 1829anti-parallel
Strand 35
A
1835 1839anti-parallel
Strand 36
A
1845 1853anti-parallel
Strand 37
A
1856 1862anti-parallel
Strand 38
A
1870 1874anti-parallel
Strand 39
A
1880 1885anti-parallel
Strand 40
A
1890 1896anti-parallel
Strand 41
A
1902 1907anti-parallel
Strand 42
A
1910 1916anti-parallel
Strand 43
A
1923 1930anti-parallel
Strand 44
A
1933 1942anti-parallel
Strand 45
A
1945 1953anti-parallel
Strand 46
A
1961 1967anti-parallel
Strand 47
A
1974 1981anti-parallel
Strand 48
A
1989 1993anti-parallel
Strand 49
A
2000 2003anti-parallel
Strand 50
A
2006 2011anti-parallel
Strand 51
A
2014 2018anti-parallel
Strand 52
A
2022 2028anti-parallel
Strand 53
A
2034 2041anti-parallel
Strand 54
A
2044 2053anti-parallel
Strand 55
A
2059 2066anti-parallel
Strand 56
A
2073 2079anti-parallel
Strand 57
A
2085 2090anti-parallel
Strand 58
A
2093 2097anti-parallel
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There are 18 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2099 2100first strand
Strand 2
A
2106 2109anti-parallel
Strand 3
A
2118 2122anti-parallel
Strand 4
A
2128 2131anti-parallel
Strand 5
A
2134 2138anti-parallel
Strand 6
A
2144 2147anti-parallel
Strand 7
A
2150 2154anti-parallel
Strand 8
A
2160 2165anti-parallel
Strand 9
A
2170 2176anti-parallel
Strand 10
A
2182 2187anti-parallel
Strand 11
A
2192 2196anti-parallel
Strand 12
A
2208 2211anti-parallel
Strand 13
A
2216 2222anti-parallel
Strand 14
A
2228 2233anti-parallel
Strand 15
A
2238 2243anti-parallel
Strand 16
A
2249 2254anti-parallel
Strand 17
A
2259 2265anti-parallel
Strand 18
A
2271 2274anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2289 2291first strand
Strand 2
A
2296 2299anti-parallel
Strand 3
A
2302 2305anti-parallel
Strand 4
A
2310 2311anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2446 2450first strand
Strand 2
A
2455 2459anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2478 2479first strand
Strand 2
A
2490 2497anti-parallel
Strand 3
A
2485 2487anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2478 2479first strand
Strand 2
A
2490 2497anti-parallel
Strand 3
A
2549 2555parallel
Strand 4
A
2540 2546anti-parallel
Strand 5
A
2522 2526anti-parallel
Strand 6
A
2513 2516anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2529 2532first strand
Strand 2
A
2535 2538anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2616 2620first strand
Strand 2
A
2637 2641anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
116 121anti-parallel
Strand 3
B
35 36anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
116 121anti-parallel
Strand 3
B
55 59anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
96 99anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
123 124anti-parallel
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