Analysis of interatomic Contacts of Structural Units in PDB entry:
6VHQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VHQ entry

There are 2 chains in PDB entry 6VHQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 32	VAL 471
B	THR 32	VAL 471

There are 32 helices in PDB entry 6VHQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	53	Right-handed alpha
Helix 2	AA2	A	53	58	Right-handed alpha
Helix 3	AA3	A	59	64	Right-handed 310
Helix 4	AA4	A	69	73	Right-handed 310
Helix 5	AA5	A	76	80	Right-handed 310
Helix 6	AA6	A	132	136	Right-handed 310
Helix 7	AA7	A	146	151	Right-handed alpha
Helix 8	AA8	A	155	159	Right-handed 310
Helix 9	AA9	A	184	187	Right-handed 310
Helix 10	AB1	A	227	234	Right-handed alpha
Helix 11	AB2	A	235	240	Right-handed 310
Helix 12	AB3	A	273	283	Right-handed 310
Helix 13	AB4	A	286	299	Right-handed alpha
Helix 14	AB5	A	302	309	Right-handed alpha
Helix 15	AB6	A	362	364	Right-handed 310
Helix 16	AB7	A	392	394	Right-handed 310
Helix 17	AB8	B	47	53	Right-handed alpha
Helix 18	AB9	B	53	58	Right-handed alpha
Helix 19	AC1	B	59	64	Right-handed 310
Helix 20	AC2	B	69	73	Right-handed 310
Helix 21	AC3	B	76	80	Right-handed 310
Helix 22	AC4	B	132	136	Right-handed 310
Helix 23	AC5	B	146	151	Right-handed alpha
Helix 24	AC6	B	153	158	Right-handed alpha
Helix 25	AC7	B	184	187	Right-handed 310
Helix 26	AC8	B	227	235	Right-handed alpha
Helix 27	AC9	B	236	240	Right-handed 310
Helix 28	AD1	B	273	283	Right-handed 310
Helix 29	AD2	B	286	299	Right-handed alpha
Helix 30	AD3	B	302	309	Right-handed alpha
Helix 31	AD4	B	362	364	Right-handed 310
Helix 32	AD5	B	392	394	Right-handed 310

There are 12 sheets in PDB entry 6VHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	324	333	parallel
Strand 3	A	311	318	anti-parallel
Strand 4	A	256	264	anti-parallel
Strand 5	A	246	253	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	120	127	anti-parallel
Strand 3	A	103	111	anti-parallel
Strand 4	A	83	91	anti-parallel
Strand 5	A	161	169	parallel
Strand 6	A	175	182	anti-parallel
Strand 7	A	190	200	anti-parallel
Strand 8	A	207	218	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	349	first strand
Strand 2	A	352	360	anti-parallel
Strand 3	A	374	381	anti-parallel
Strand 4	A	389	390	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	349	first strand
Strand 2	A	352	360	anti-parallel
Strand 3	A	374	381	anti-parallel
Strand 4	A	396	400	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	416	first strand
Strand 2	A	423	430	anti-parallel
Strand 3	A	442	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	416	first strand
Strand 2	A	423	430	anti-parallel
Strand 3	A	447	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	324	333	parallel
Strand 3	B	311	318	anti-parallel
Strand 4	B	256	264	anti-parallel
Strand 5	B	246	253	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	120	127	anti-parallel
Strand 3	B	103	111	anti-parallel
Strand 4	B	83	91	anti-parallel
Strand 5	B	161	169	parallel
Strand 6	B	175	182	anti-parallel
Strand 7	B	190	201	anti-parallel
Strand 8	B	206	218	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	349	first strand
Strand 2	B	352	360	anti-parallel
Strand 3	B	374	381	anti-parallel
Strand 4	B	389	390	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	349	first strand
Strand 2	B	352	360	anti-parallel
Strand 3	B	374	381	anti-parallel
Strand 4	B	396	400	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	416	first strand
Strand 2	B	423	430	anti-parallel
Strand 3	B	442	443	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	416	first strand
Strand 2	B	423	430	anti-parallel
Strand 3	B	447	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VHQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VHQ