Analysis of interatomic Contacts of Structural Units in PDB entry:
6VHR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VHR entry

There are 3 chains in PDB entry 6VHR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6GLY 78
B
 ALA 2ALA 168
C
 ASN 6PRO 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6VHR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 31Right-handed alpha
Helix 2
AA2
A
31 36Right-handed alpha
Helix 3
AA3
A
44 74Right-handed alpha
Helix 4
AA4
B
10 20Right-handed alpha
Helix 5
AA5
B
24 50Right-handed alpha
Helix 6
AA6
B
66 73Right-handed alpha
Helix 7
AA7
B
74 105Right-handed alpha
Helix 8
AA8
B
109 126Right-handed alpha
Helix 9
AA9
B
128 132Right-handed 310
Helix 10
AB1
B
134 165Right-handed alpha
Helix 11
AB2
C
12 23Right-handed alpha
Helix 12
AB3
C
39 41Right-handed 310
Helix 13
AB4
C
42 58Right-handed alpha
Helix 14
AB5
C
67 79Right-handed alpha
Helix 15
AB6
C
143 148Right-handed 310
Helix 16
AB7
C
170 181Right-handed alpha
Helix 17
AB8
C
199 206Right-handed alpha
Helix 18
AB9
C
265 277Right-handed alpha
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There are 2 sheets in PDB entry 6VHR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 11first strand
Strand 2
C
133 139anti-parallel
Strand 3
C
124 129anti-parallel
Strand 4
C
100 107anti-parallel
Strand 5
C
82 89anti-parallel
Strand 6
C
212 220anti-parallel
Strand 7
C
233 237anti-parallel
Strand 8
C
242 249anti-parallel
Strand 9
C
255 261anti-parallel
Strand 10
C
166 169anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 11first strand
Strand 2
C
133 139anti-parallel
Strand 3
C
124 129anti-parallel
Strand 4
C
100 107anti-parallel
Strand 5
C
82 89anti-parallel
Strand 6
C
212 220anti-parallel
Strand 7
C
227 228anti-parallel
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