Analysis of interatomic Contacts of Structural Units in PDB entry:
6VHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VHT entry

There is 1 chain in PDB entry 6VHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 9LEU 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6VHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
39 56Right-handed alpha
Helix 3
AA3
A
71 84Right-handed alpha
Helix 4
AA4
A
96 108Right-handed alpha
Helix 5
AA5
A
130 137Right-handed alpha
Helix 6
AA6
A
173 178Right-handed alpha
Helix 7
AA7
A
179 181Right-handed 310
Helix 8
AA8
A
203 214Right-handed alpha
Helix 9
AA9
A
228 239Right-handed alpha
Helix 10
AB1
A
248 258Right-handed alpha
Helix 11
AB2
A
259 264Right-handed 310
Helix 12
AB3
A
276 286Right-handed alpha
Helix 13
AB4
A
298 301Right-handed 310
Helix 14
AB5
A
363 369Right-handed alpha
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There are 5 sheets in PDB entry 6VHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
218 221parallel
Strand 4
A
193 196parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
63 67parallel
Strand 3
A
111 114parallel
Strand 4
A
126 129parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 160first strand
Strand 2
A
166 172anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 247first strand
Strand 2
A
267 271parallel
Strand 3
A
290 296parallel
Strand 4
A
303 308anti-parallel
Strand 5
A
325 326anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 335first strand
Strand 2
A
348 354anti-parallel
Strand 3
A
379 390anti-parallel
Strand 4
A
371 376anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il