Analysis of interatomic Contacts of Structural Units in PDB entry:
6VHU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VHU entry

There are 2 chains in PDB entry 6VHU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 8	VAL 401
B	LEU 10	VAL 401

There are 31 helices in PDB entry 6VHU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	39	56	Right-handed alpha
Helix 3	AA3	A	71	84	Right-handed alpha
Helix 4	AA4	A	96	108	Right-handed alpha
Helix 5	AA5	A	116	120	Right-handed 310
Helix 6	AA6	A	130	136	Right-handed alpha
Helix 7	AA7	A	173	178	Right-handed alpha
Helix 8	AA8	A	179	181	Right-handed 310
Helix 9	AA9	A	203	214	Right-handed alpha
Helix 10	AB1	A	228	239	Right-handed alpha
Helix 11	AB2	A	248	259	Right-handed alpha
Helix 12	AB3	A	260	264	Right-handed 310
Helix 13	AB4	A	276	286	Right-handed alpha
Helix 14	AB5	A	298	301	Right-handed 310
Helix 15	AB6	A	363	370	Right-handed alpha
Helix 16	AB7	B	12	24	Right-handed alpha
Helix 17	AB8	B	39	54	Right-handed alpha
Helix 18	AB9	B	71	85	Right-handed alpha
Helix 19	AC1	B	96	108	Right-handed alpha
Helix 20	AC2	B	130	136	Right-handed alpha
Helix 21	AC3	B	173	178	Right-handed alpha
Helix 22	AC4	B	179	181	Right-handed 310
Helix 23	AC5	B	203	214	Right-handed alpha
Helix 24	AC6	B	228	239	Right-handed alpha
Helix 25	AC7	B	248	258	Right-handed alpha
Helix 26	AC8	B	259	264	Right-handed 310
Helix 27	AC9	B	276	279	Right-handed 310
Helix 28	AD1	B	280	287	Right-handed alpha
Helix 29	AD2	B	298	301	Right-handed 310
Helix 30	AD3	B	311	316	Right-handed alpha
Helix 31	AD4	B	363	370	Right-handed alpha

There are 12 sheets in PDB entry 6VHU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	28	32	anti-parallel
Strand 3	A	218	221	parallel
Strand 4	A	193	196	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	63	67	parallel
Strand 3	A	111	114	parallel
Strand 4	A	126	129	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	159	first strand
Strand 2	A	167	172	anti-parallel
Strand 3	A	360	361	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	247	first strand
Strand 2	A	267	271	parallel
Strand 3	A	290	296	parallel
Strand 4	A	303	308	anti-parallel
Strand 5	A	325	326	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	398	400	anti-parallel
Strand 3	A	379	392	anti-parallel
Strand 4	A	348	354	anti-parallel
Strand 5	A	330	335	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	398	400	anti-parallel
Strand 3	A	379	392	anti-parallel
Strand 4	A	371	376	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	28	32	anti-parallel
Strand 3	B	218	221	parallel
Strand 4	B	193	196	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	63	67	parallel
Strand 3	B	111	114	parallel
Strand 4	B	126	129	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	158	first strand
Strand 2	B	168	172	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	247	first strand
Strand 2	B	267	271	parallel
Strand 3	B	290	296	parallel
Strand 4	B	303	308	anti-parallel
Strand 5	B	325	326	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	398	400	anti-parallel
Strand 3	B	379	392	anti-parallel
Strand 4	B	348	354	anti-parallel
Strand 5	B	330	335	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	398	400	anti-parallel
Strand 3	B	379	392	anti-parallel
Strand 4	B	371	376	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VHU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VHU