Analysis of interatomic Contacts of Structural Units in PDB entry:
6VHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VHV entry

There is 1 chain in PDB entry 6VHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 9GLU 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 6VHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
39 55Right-handed alpha
Helix 3
AA3
A
71 84Right-handed alpha
Helix 4
AA4
A
96 108Right-handed alpha
Helix 5
AA5
A
130 134Right-handed alpha
Helix 6
AA6
A
173 178Right-handed alpha
Helix 7
AA7
A
179 181Right-handed 310
Helix 8
AA8
A
204 214Right-handed alpha
Helix 9
AA9
A
228 239Right-handed alpha
Helix 10
AB1
A
248 258Right-handed alpha
Helix 11
AB2
A
259 264Right-handed 310
Helix 12
AB3
A
276 286Right-handed alpha
Helix 13
AB4
A
297 301Right-handed 310
Helix 14
AB5
A
311 315Right-handed 310
Helix 15
AB6
A
363 369Right-handed alpha
Helix 16
AB7
A
417 426Right-handed alpha
Helix 17
AB8
A
458 470Right-handed alpha
Helix 18
AB9
A
471 475Right-handed 310
Helix 19
AC1
A
494 502Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6VHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
218 221parallel
Strand 4
A
193 196parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
63 67parallel
Strand 3
A
111 114parallel
Strand 4
A
126 129parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 159first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
360 361anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 247first strand
Strand 2
A
267 271parallel
Strand 3
A
290 294parallel
Strand 4
A
305 308anti-parallel
Strand 5
A
325 326anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 335first strand
Strand 2
A
348 354anti-parallel
Strand 3
A
380 392anti-parallel
Strand 4
A
371 375anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 335first strand
Strand 2
A
348 354anti-parallel
Strand 3
A
380 392anti-parallel
Strand 4
A
398 400anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
414 416anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 438first strand
Strand 2
A
445 451anti-parallel
Strand 3
A
478 481parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il