Analysis of interatomic Contacts of Structural Units in PDB entry:
6VI0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VI0 entry

There are 12 chains in PDB entry 6VI0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 518	ASP 664
G	ASN 33	VAL 505
L	LEU 4	GLN 106
H	GLN 1	PRO 114
A	VAL 518	ASP 664
C	ASN 33	VAL 505
D	LEU 4	GLN 106
E	GLN 1	PRO 114
F	VAL 518	ASP 664
I	ASN 33	VAL 505
J	LEU 4	GLN 106
K	GLN 1	PRO 114

There are 45 helices in PDB entry 6VI0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	529	534	Right-handed alpha
Helix 2	AA2	B	536	543	Right-handed alpha
Helix 3	AA3	B	566	593	Right-handed alpha
Helix 4	AA4	B	594	597	Right-handed 310
Helix 5	AA5	B	627	635	Right-handed alpha
Helix 6	AA6	B	636	639	Right-handed 310
Helix 7	AA7	B	641	658	Right-handed alpha
Helix 8	AA8	G	58	63	Right-handed alpha
Helix 9	AA9	G	99	115	Right-handed alpha
Helix 10	AB1	G	122	126	Right-handed 310
Helix 11	AB2	G	334	354	Right-handed alpha
Helix 12	AB3	G	478	482	Right-handed 310
Helix 13	AB4	L	79	83	Right-handed 310
Helix 14	AB5	H	61	64	Right-handed 310
Helix 15	AB6	H	83	87	Right-handed 310
Helix 16	AB7	A	529	534	Right-handed alpha
Helix 17	AB8	A	536	543	Right-handed alpha
Helix 18	AB9	A	566	593	Right-handed alpha
Helix 19	AC1	A	594	597	Right-handed 310
Helix 20	AC2	A	627	635	Right-handed alpha
Helix 21	AC3	A	636	639	Right-handed 310
Helix 22	AC4	A	641	664	Right-handed alpha
Helix 23	AC5	C	58	63	Right-handed alpha
Helix 24	AC6	C	99	115	Right-handed alpha
Helix 25	AC7	C	122	126	Right-handed 310
Helix 26	AC8	C	334	354	Right-handed alpha
Helix 27	AC9	C	478	482	Right-handed 310
Helix 28	AD1	D	79	83	Right-handed 310
Helix 29	AD2	E	61	64	Right-handed 310
Helix 30	AD3	E	83	87	Right-handed 310
Helix 31	AD4	F	529	534	Right-handed alpha
Helix 32	AD5	F	536	543	Right-handed alpha
Helix 33	AD6	F	566	593	Right-handed alpha
Helix 34	AD7	F	594	597	Right-handed 310
Helix 35	AD8	F	627	635	Right-handed alpha
Helix 36	AD9	F	636	639	Right-handed 310
Helix 37	AE1	F	641	658	Right-handed alpha
Helix 38	AE2	I	58	63	Right-handed alpha
Helix 39	AE3	I	99	115	Right-handed alpha
Helix 40	AE4	I	122	126	Right-handed 310
Helix 41	AE5	I	334	354	Right-handed alpha
Helix 42	AE6	I	478	482	Right-handed 310
Helix 43	AE7	J	79	83	Right-handed 310
Helix 44	AE8	K	61	64	Right-handed 310
Helix 45	AE9	K	83	87	Right-handed 310

There are 48 sheets in PDB entry 6VI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	39	anti-parallel
Strand 3	G	496	499	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	488	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	130	first strand
Strand 2	G	190	193	anti-parallel
Strand 3	G	181	183	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	155	first strand
Strand 2	G	176	177	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	162	first strand
Strand 2	G	169	173	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	298	anti-parallel
Strand 3	G	330	333	anti-parallel
Strand 4	G	414	421	anti-parallel
Strand 5	G	381	385	anti-parallel
Strand 6	G	374	378	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	298	anti-parallel
Strand 3	G	443	455	anti-parallel
Strand 4	G	465	470	anti-parallel
Strand 5	G	358	361	parallel
Strand 6	G	394	395	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	302	308	first strand
Strand 2	G	316	322	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	423	424	first strand
Strand 2	G	434	435	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	71	75	anti-parallel
Strand 4	L	64	66	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	103	105	parallel
Strand 3	L	85	88	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	22	25	anti-parallel
Strand 3	H	76	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	108	111	parallel
Strand 3	H	88	91	anti-parallel
Strand 4	H	37	39	anti-parallel
Strand 5	H	45	47	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	52	first strand
Strand 2	H	56	59	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	609	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	496	499	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	488	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	216	218	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	190	193	anti-parallel
Strand 3	C	181	183	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	176	177	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	169	173	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	298	anti-parallel
Strand 3	C	330	333	anti-parallel
Strand 4	C	414	421	anti-parallel
Strand 5	C	381	385	anti-parallel
Strand 6	C	374	378	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	298	anti-parallel
Strand 3	C	443	455	anti-parallel
Strand 4	C	465	470	anti-parallel
Strand 5	C	358	361	parallel
Strand 6	C	394	395	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	308	first strand
Strand 2	C	316	322	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	434	435	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	71	75	anti-parallel
Strand 4	D	64	66	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	103	105	parallel
Strand 3	D	85	88	anti-parallel
Strand 4	D	34	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	22	25	anti-parallel
Strand 3	E	76	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	108	111	parallel
Strand 3	E	88	91	anti-parallel
Strand 4	E	37	39	anti-parallel
Strand 5	E	45	47	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	52	first strand
Strand 2	E	56	59	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	603	609	first strand
Strand 2	I	35	39	anti-parallel
Strand 3	I	496	499	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	488	491	anti-parallel
Strand 3	I	223	228	anti-parallel
Strand 4	I	242	245	anti-parallel
Strand 5	I	84	85	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	55	first strand
Strand 2	I	216	218	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	94	first strand
Strand 2	I	236	239	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	130	first strand
Strand 2	I	190	193	anti-parallel
Strand 3	I	181	183	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	155	first strand
Strand 2	I	176	177	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	162	first strand
Strand 2	I	169	173	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	330	333	anti-parallel
Strand 4	I	414	421	anti-parallel
Strand 5	I	381	385	anti-parallel
Strand 6	I	374	378	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	443	455	anti-parallel
Strand 4	I	465	470	anti-parallel
Strand 5	I	358	361	parallel
Strand 6	I	394	395	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	302	308	first strand
Strand 2	I	316	322	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	423	424	first strand
Strand 2	I	434	435	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	71	75	anti-parallel
Strand 4	J	64	66	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	103	105	parallel
Strand 3	J	85	88	anti-parallel
Strand 4	J	34	38	anti-parallel
Strand 5	J	45	49	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	22	25	anti-parallel
Strand 3	K	76	82	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	108	111	parallel
Strand 3	K	88	91	anti-parallel
Strand 4	K	37	39	anti-parallel
Strand 5	K	45	47	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	49	52	first strand
Strand 2	K	56	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VI0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VI0