Analysis of interatomic Contacts of Structural Units in PDB entry:
6VID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VID entry

There are 6 chains in PDB entry 6VID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LYS 133
B
 THR 1LYS 133
C
 THR 1LYS 133
D
 THR 1LYS 133
E
 THR 1LYS 133
F
 ASP 3LYS 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6VID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
26 34Right-handed alpha
Helix 3
AA3
B
15 23Right-handed alpha
Helix 4
AA4
B
26 34Right-handed alpha
Helix 5
AA5
C
15 23Right-handed alpha
Helix 6
AA6
C
26 34Right-handed alpha
Helix 7
AA7
D
15 23Right-handed alpha
Helix 8
AA8
D
26 34Right-handed alpha
Helix 9
AA9
E
15 23Right-handed alpha
Helix 10
AB1
E
26 34Right-handed alpha
Helix 11
AB2
F
15 23Right-handed alpha
Helix 12
AB3
F
27 32Right-handed alpha
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There are 7 sheets in PDB entry 6VID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 65first strand
Strand 2
A
48 57anti-parallel
Strand 3
A
36 45anti-parallel
Strand 4
A
6 14anti-parallel
Strand 5
D
124 132anti-parallel
Strand 6
D
114 121anti-parallel
Strand 7
D
105 111anti-parallel
Strand 8
D
92 98anti-parallel
Strand 9
D
81 89anti-parallel
Strand 10
D
70 73anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
B
48 57anti-parallel
Strand 3
B
36 45anti-parallel
Strand 4
B
6 14anti-parallel
Strand 5
A
124 132anti-parallel
Strand 6
A
114 121anti-parallel
Strand 7
A
105 111anti-parallel
Strand 8
A
92 98anti-parallel
Strand 9
A
81 89anti-parallel
Strand 10
A
70 73anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
D
48 57anti-parallel
Strand 3
D
36 45anti-parallel
Strand 4
D
6 14anti-parallel
Strand 5
B
124 132anti-parallel
Strand 6
B
114 121anti-parallel
Strand 7
B
105 111anti-parallel
Strand 8
B
92 98anti-parallel
Strand 9
B
80 89anti-parallel
Strand 10
B
70 74anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 65first strand
Strand 2
C
48 55anti-parallel
Strand 3
C
38 45anti-parallel
Strand 4
C
6 14anti-parallel
Strand 5
E
124 132anti-parallel
Strand 6
E
114 121anti-parallel
Strand 7
E
105 111anti-parallel
Strand 8
E
92 98anti-parallel
Strand 9
E
81 89anti-parallel
Strand 10
E
70 73anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 65first strand
Strand 2
F
48 55anti-parallel
Strand 3
F
38 45anti-parallel
Strand 4
F
6 14anti-parallel
Strand 5
C
126 132anti-parallel
Strand 6
C
114 119anti-parallel
Strand 7
C
105 111anti-parallel
Strand 8
C
92 98anti-parallel
Strand 9
C
81 84anti-parallel
Strand 10
C
70 73anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 65first strand
Strand 2
F
48 55anti-parallel
Strand 3
F
38 45anti-parallel
Strand 4
F
6 14anti-parallel
Strand 5
C
126 132anti-parallel
Strand 6
C
114 119anti-parallel
Strand 7
C
105 111anti-parallel
Strand 8
C
92 98anti-parallel
Strand 9
C
87 89anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
60 65first strand
Strand 2
E
48 57anti-parallel
Strand 3
E
36 45anti-parallel
Strand 4
E
6 10anti-parallel
Strand 5
F
125 132anti-parallel
Strand 6
F
114 120anti-parallel
Strand 7
F
105 111anti-parallel
Strand 8
F
92 98anti-parallel
Strand 9
F
81 89anti-parallel
Strand 10
F
70 73anti-parallel
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