Analysis of interatomic Contacts of Structural Units in PDB entry:
6VIE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VIE entry

There are 4 chains in PDB entry 6VIE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 131	UNK 316
B	ALA 317	HIS 404
C	SER 3	GLN 484
D	PRO 2	GLN 484

There are 37 helices in PDB entry 6VIE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	137	148	Right-handed alpha
Helix 2	AA2	A	149	152	Right-handed 310
Helix 3	AA3	A	181	196	Right-handed alpha
Helix 4	AA4	A	207	220	Right-handed alpha
Helix 5	AA5	A	221	227	Right-handed 310
Helix 6	AA6	A	258	265	Right-handed alpha
Helix 7	AA7	A	270	274	Right-handed 310
Helix 8	AA8	B	348	361	Right-handed alpha
Helix 9	AA9	B	365	377	Right-handed alpha
Helix 10	AB1	C	4	16	Right-handed alpha
Helix 11	AB2	C	30	35	Right-handed 310
Helix 12	AB3	C	127	138	Right-handed alpha
Helix 13	AB4	C	147	153	Right-handed alpha
Helix 14	AB5	C	289	302	Right-handed alpha
Helix 15	AB6	C	307	322	Right-handed alpha
Helix 16	AB7	C	324	341	Right-handed alpha
Helix 17	AB8	C	349	357	Right-handed alpha
Helix 18	AB9	C	367	383	Right-handed alpha
Helix 19	AC1	C	385	394	Right-handed alpha
Helix 20	AC2	C	401	415	Right-handed alpha
Helix 21	AC3	C	439	447	Right-handed alpha
Helix 22	AC4	C	462	464	Right-handed 310
Helix 23	AC5	C	465	482	Right-handed alpha
Helix 24	AC6	D	5	16	Right-handed alpha
Helix 25	AC7	D	29	35	Right-handed 310
Helix 26	AC8	D	127	138	Right-handed alpha
Helix 27	AC9	D	147	153	Right-handed alpha
Helix 28	AD1	D	289	301	Right-handed alpha
Helix 29	AD2	D	309	323	Right-handed alpha
Helix 30	AD3	D	324	341	Right-handed alpha
Helix 31	AD4	D	349	357	Right-handed alpha
Helix 32	AD5	D	370	383	Right-handed alpha
Helix 33	AD6	D	385	394	Right-handed alpha
Helix 34	AD7	D	401	415	Right-handed alpha
Helix 35	AD8	D	439	447	Right-handed alpha
Helix 36	AD9	D	462	464	Right-handed 310
Helix 37	AE1	D	465	482	Right-handed alpha

There are 11 sheets in PDB entry 6VIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	204	first strand
Strand 2	A	164	169	parallel
Strand 3	A	230	235	parallel
Strand 4	A	278	283	parallel
Strand 5	B	327	331	parallel
Strand 6	B	388	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	255	257	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	289	first strand
Strand 2	B	336	337	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	340	342	anti-parallel
Strand 3	C	250	251	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	214	223	anti-parallel
Strand 3	C	157	167	anti-parallel
Strand 4	C	119	125	anti-parallel
Strand 5	C	87	95	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	40	43	anti-parallel
Strand 3	C	157	167	anti-parallel
Strand 4	C	214	223	anti-parallel
Strand 5	C	229	231	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	207	209	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	25	first strand
Strand 2	D	214	223	anti-parallel
Strand 3	D	157	167	anti-parallel
Strand 4	D	120	125	anti-parallel
Strand 5	D	87	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	40	43	anti-parallel
Strand 3	D	157	167	anti-parallel
Strand 4	D	214	223	anti-parallel
Strand 5	D	229	231	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	423	424	first strand
Strand 2	D	459	460	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VIE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VIE