Analysis of interatomic Contacts of Structural Units in PDB entry:
6VIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VIH entry

There are 2 chains in PDB entry 6VIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 2PHE 209
A
 ALA 2TYR 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6VIH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 29Right-handed alpha
Helix 2
AA2
B
74 79Right-handed alpha
Helix 3
AA3
B
80 86Right-handed 310
Helix 4
AA4
B
99 105Right-handed alpha
Helix 5
AA5
B
105 115Right-handed alpha
Helix 6
AA6
B
131 137Right-handed alpha
Helix 7
AA7
B
156 171Right-handed alpha
Helix 8
AA8
B
190 209Right-handed alpha
Helix 9
AA9
A
18 29Right-handed alpha
Helix 10
AB1
A
74 79Right-handed alpha
Helix 11
AB2
A
80 86Right-handed 310
Helix 12
AB3
A
99 105Right-handed alpha
Helix 13
AB4
A
105 116Right-handed alpha
Helix 14
AB5
A
134 138Right-handed 310
Helix 15
AB6
A
156 171Right-handed alpha
Helix 16
AB7
A
182 186Right-handed 310
Helix 17
AB8
A
190 206Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6VIH.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 177first strand
Strand 2
B
142 147parallel
Strand 3
B
90 96parallel
Strand 4
B
6 12parallel
Strand 5
B
58 66parallel
Strand 6
B
41 50anti-parallel
Strand 7
A
42 50anti-parallel
Strand 8
A
58 66anti-parallel
Strand 9
A
6 12parallel
Strand 10
A
90 96parallel
Strand 11
A
142 147parallel
Strand 12
A
174 177parallel
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