Analysis of interatomic Contacts of Structural Units in PDB entry:
6VIK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VIK entry

There is 1 chain in PDB entry 6VIK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 1ARG 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6VIK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 27Right-handed alpha
Helix 2
AA2
B
81 85Right-handed 310
Helix 3
AA3
B
99 105Right-handed alpha
Helix 4
AA4
B
105 112Right-handed alpha
Helix 5
AA5
B
148 152Right-handed 310
Helix 6
AA6
B
153 171Right-handed alpha
Helix 7
AA7
B
182 187Right-handed 310
Helix 8
AA8
B
190 207Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6VIK.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
38 50anti-parallel
Strand 3
B
58 66anti-parallel
Strand 4
B
8 12parallel
Strand 5
B
90 96parallel
Strand 6
B
142 147parallel
Strand 7
B
174 177parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il