Analysis of interatomic Contacts of Structural Units in PDB entry:
6VIL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VIL entry

There are 16 chains in PDB entry 6VIL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2486	LEU 2642
B	GLN 2486	VAL 2641
I	THR 22	ARG 26
I	SER 28	GLY 33
J	THR 22	ARG 26
J	SER 28	GLY 33
D	ARG 2485	LEU 2642
E	ARG 2485	LEU 2642
F	LEU 2487	LEU 2642
G	ARG 2485	LEU 2642
H	ARG 2485	LEU 2642
C	ARG 2485	LEU 2642
L	ALA 25	ARG 26
L	SER 28	ALA 29
M	ALA 25	ARG 26
M	SER 28	SER 28

There are 14 helices in PDB entry 6VIL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2561	2565	Right-handed 310
Helix 2	AA2	A	2600	2608	Right-handed alpha
Helix 3	AA3	B	2561	2565	Right-handed 310
Helix 4	AA4	B	2600	2608	Right-handed alpha
Helix 5	AA5	D	2600	2608	Right-handed alpha
Helix 6	AA6	E	2561	2565	Right-handed 310
Helix 7	AA7	E	2600	2608	Right-handed alpha
Helix 8	AA8	F	2600	2608	Right-handed alpha
Helix 9	AA9	G	2561	2565	Right-handed 310
Helix 10	AB1	G	2600	2608	Right-handed alpha
Helix 11	AB2	H	2561	2565	Right-handed 310
Helix 12	AB3	H	2600	2608	Right-handed alpha
Helix 13	AB4	C	2561	2565	Right-handed 310
Helix 14	AB5	C	2600	2608	Right-handed alpha

There are 25 sheets in PDB entry 6VIL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2489	2491	first strand
Strand 2	A	2511	2514	anti-parallel
Strand 3	A	2517	2520	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2495	2498	first strand
Strand 2	A	2505	2509	anti-parallel
Strand 3	A	2538	2547	anti-parallel
Strand 4	A	2524	2527	anti-parallel
Strand 5	A	2592	2599	anti-parallel
Strand 6	A	2619	2626	parallel
Strand 7	A	2633	2635	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2495	2498	first strand
Strand 2	A	2505	2509	anti-parallel
Strand 3	A	2538	2547	anti-parallel
Strand 4	A	2551	2560	anti-parallel
Strand 5	A	2577	2588	anti-parallel
Strand 6	A	2619	2626	parallel
Strand 7	A	2633	2635	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2489	2490	first strand
Strand 2	B	2511	2514	anti-parallel
Strand 3	B	2517	2520	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2495	2497	first strand
Strand 2	B	2506	2509	anti-parallel
Strand 3	B	2538	2546	anti-parallel
Strand 4	B	2524	2527	anti-parallel
Strand 5	B	2592	2599	anti-parallel
Strand 6	B	2619	2626	parallel
Strand 7	B	2633	2635	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2495	2497	first strand
Strand 2	B	2506	2509	anti-parallel
Strand 3	B	2538	2546	anti-parallel
Strand 4	B	2552	2560	anti-parallel
Strand 5	B	2577	2588	anti-parallel
Strand 6	B	2619	2626	parallel
Strand 7	B	2633	2635	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2489	2490	first strand
Strand 2	D	2511	2514	anti-parallel
Strand 3	D	2517	2520	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2495	2497	first strand
Strand 2	D	2506	2509	anti-parallel
Strand 3	D	2538	2546	anti-parallel
Strand 4	D	2524	2527	anti-parallel
Strand 5	D	2592	2599	anti-parallel
Strand 6	D	2619	2626	parallel
Strand 7	D	2552	2558	first strand
Strand 8	D	2584	2588	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2577	2580	first strand
Strand 2	D	2619	2626	parallel
Strand 3	D	2592	2599	parallel
Strand 4	D	2524	2527	anti-parallel
Strand 5	D	2538	2546	anti-parallel
Strand 6	D	2633	2634	first strand

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2489	2490	first strand
Strand 2	E	2511	2514	anti-parallel
Strand 3	E	2517	2520	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2507	2509	first strand
Strand 2	E	2538	2546	anti-parallel
Strand 3	E	2524	2527	anti-parallel
Strand 4	E	2592	2599	anti-parallel
Strand 5	E	2619	2626	parallel
Strand 6	E	2633	2635	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2507	2509	first strand
Strand 2	E	2538	2546	anti-parallel
Strand 3	E	2552	2560	anti-parallel
Strand 4	E	2577	2588	anti-parallel
Strand 5	E	2619	2626	parallel
Strand 6	E	2633	2635	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2489	2490	first strand
Strand 2	F	2511	2514	anti-parallel
Strand 3	F	2517	2520	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2495	2497	first strand
Strand 2	F	2506	2508	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2592	2596	first strand
Strand 2	F	2524	2527	anti-parallel
Strand 3	F	2538	2546	anti-parallel
Strand 4	F	2552	2560	anti-parallel
Strand 5	F	2577	2588	anti-parallel
Strand 6	F	2620	2626	parallel
Strand 7	F	2598	2599	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2592	2596	first strand
Strand 2	F	2524	2527	anti-parallel
Strand 3	F	2538	2546	anti-parallel
Strand 4	F	2552	2560	anti-parallel
Strand 5	F	2577	2588	anti-parallel
Strand 6	F	2620	2626	parallel
Strand 7	F	2633	2635	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2489	2490	first strand
Strand 2	G	2511	2514	anti-parallel
Strand 3	G	2517	2520	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2507	2508	first strand
Strand 2	G	2538	2546	anti-parallel
Strand 3	G	2524	2527	anti-parallel
Strand 4	G	2592	2599	anti-parallel
Strand 5	G	2619	2626	parallel
Strand 6	G	2633	2635	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2507	2508	first strand
Strand 2	G	2538	2546	anti-parallel
Strand 3	G	2552	2560	anti-parallel
Strand 4	G	2577	2588	anti-parallel
Strand 5	G	2619	2626	parallel
Strand 6	G	2633	2635	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2489	2491	first strand
Strand 2	H	2511	2514	anti-parallel
Strand 3	H	2517	2520	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2495	2496	first strand
Strand 2	H	2507	2508	anti-parallel
Strand 3	H	2538	2546	anti-parallel
Strand 4	H	2524	2527	anti-parallel
Strand 5	H	2592	2599	anti-parallel
Strand 6	H	2619	2626	parallel
Strand 7	H	2633	2635	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2495	2496	first strand
Strand 2	H	2507	2508	anti-parallel
Strand 3	H	2538	2546	anti-parallel
Strand 4	H	2552	2560	anti-parallel
Strand 5	H	2577	2588	anti-parallel
Strand 6	H	2619	2626	parallel
Strand 7	H	2633	2635	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2489	2490	first strand
Strand 2	C	2511	2514	anti-parallel
Strand 3	C	2517	2520	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2495	2496	first strand
Strand 2	C	2507	2509	anti-parallel
Strand 3	C	2538	2546	anti-parallel
Strand 4	C	2524	2527	anti-parallel
Strand 5	C	2592	2599	anti-parallel
Strand 6	C	2619	2626	parallel
Strand 7	C	2633	2635	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2495	2496	first strand
Strand 2	C	2507	2509	anti-parallel
Strand 3	C	2538	2546	anti-parallel
Strand 4	C	2552	2560	anti-parallel
Strand 5	C	2577	2588	anti-parallel
Strand 6	C	2619	2626	parallel
Strand 7	C	2633	2635	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VIL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VIL