Analysis of interatomic Contacts of Structural Units in PDB entry:
6VIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VIM entry

There are 8 chains in PDB entry 6VIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	VAL 359
B	GLU 3	VAL 359
C	GLU 3	VAL 359
D	GLU 3	VAL 359
E	GLU 3	VAL 359
F	GLU 3	VAL 359
G	GLU 3	VAL 359
H	GLU 3	VAL 359

There are112 helices in PDB entry 6VIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	57	Right-handed 310
Helix 2	AA2	A	58	74	Right-handed alpha
Helix 3	AA3	A	79	91	Right-handed alpha
Helix 4	AA4	A	97	119	Right-handed alpha
Helix 5	AA5	A	122	127	Right-handed alpha
Helix 6	AA6	A	143	158	Right-handed alpha
Helix 7	AA7	A	171	187	Right-handed alpha
Helix 8	AA8	A	201	216	Right-handed alpha
Helix 9	AA9	A	228	238	Right-handed alpha
Helix 10	AB1	A	251	261	Right-handed alpha
Helix 11	AB2	A	275	291	Right-handed alpha
Helix 12	AB3	A	299	309	Right-handed alpha
Helix 13	AB4	A	350	355	Right-handed alpha
Helix 14	AB5	A	356	358	Right-handed 310
Helix 15	AB6	B	55	57	Right-handed 310
Helix 16	AB7	B	58	74	Right-handed alpha
Helix 17	AB8	B	79	91	Right-handed alpha
Helix 18	AB9	B	97	119	Right-handed alpha
Helix 19	AC1	B	122	127	Right-handed alpha
Helix 20	AC2	B	143	158	Right-handed alpha
Helix 21	AC3	B	171	187	Right-handed alpha
Helix 22	AC4	B	201	216	Right-handed alpha
Helix 23	AC5	B	228	237	Right-handed alpha
Helix 24	AC6	B	251	261	Right-handed alpha
Helix 25	AC7	B	275	290	Right-handed alpha
Helix 26	AC8	B	299	309	Right-handed alpha
Helix 27	AC9	B	322	326	Right-handed 310
Helix 28	AD1	B	350	355	Right-handed alpha
Helix 29	AD2	B	356	358	Right-handed 310
Helix 30	AD3	C	55	57	Right-handed 310
Helix 31	AD4	C	58	74	Right-handed alpha
Helix 32	AD5	C	79	91	Right-handed alpha
Helix 33	AD6	C	97	119	Right-handed alpha
Helix 34	AD7	C	122	127	Right-handed alpha
Helix 35	AD8	C	143	158	Right-handed alpha
Helix 36	AD9	C	171	187	Right-handed alpha
Helix 37	AE1	C	201	216	Right-handed alpha
Helix 38	AE2	C	228	238	Right-handed alpha
Helix 39	AE3	C	251	261	Right-handed alpha
Helix 40	AE4	C	275	291	Right-handed alpha
Helix 41	AE5	C	299	309	Right-handed alpha
Helix 42	AE6	C	350	355	Right-handed alpha
Helix 43	AE7	C	356	358	Right-handed 310
Helix 44	AE8	D	55	57	Right-handed 310
Helix 45	AE9	D	58	74	Right-handed alpha
Helix 46	AF1	D	79	91	Right-handed alpha
Helix 47	AF2	D	97	119	Right-handed alpha
Helix 48	AF3	D	122	127	Right-handed alpha
Helix 49	AF4	D	143	158	Right-handed alpha
Helix 50	AF5	D	171	187	Right-handed alpha
Helix 51	AF6	D	201	216	Right-handed alpha
Helix 52	AF7	D	228	238	Right-handed alpha
Helix 53	AF8	D	251	262	Right-handed alpha
Helix 54	AF9	D	275	291	Right-handed alpha
Helix 55	AG1	D	299	309	Right-handed alpha
Helix 56	AG2	D	350	355	Right-handed alpha
Helix 57	AG3	D	356	358	Right-handed 310
Helix 58	AG4	E	55	57	Right-handed 310
Helix 59	AG5	E	58	74	Right-handed alpha
Helix 60	AG6	E	79	91	Right-handed alpha
Helix 61	AG7	E	97	119	Right-handed alpha
Helix 62	AG8	E	122	127	Right-handed alpha
Helix 63	AG9	E	143	158	Right-handed alpha
Helix 64	AH1	E	171	187	Right-handed alpha
Helix 65	AH2	E	201	215	Right-handed alpha
Helix 66	AH3	E	228	238	Right-handed alpha
Helix 67	AH4	E	251	261	Right-handed alpha
Helix 68	AH5	E	275	291	Right-handed alpha
Helix 69	AH6	E	299	309	Right-handed alpha
Helix 70	AH7	E	350	355	Right-handed alpha
Helix 71	AH8	E	356	358	Right-handed 310
Helix 72	AH9	F	55	74	Right-handed alpha
Helix 73	AI1	F	79	91	Right-handed alpha
Helix 74	AI2	F	97	119	Right-handed alpha
Helix 75	AI3	F	122	127	Right-handed alpha
Helix 76	AI4	F	143	158	Right-handed alpha
Helix 77	AI5	F	171	187	Right-handed alpha
Helix 78	AI6	F	201	216	Right-handed alpha
Helix 79	AI7	F	228	238	Right-handed alpha
Helix 80	AI8	F	251	261	Right-handed alpha
Helix 81	AI9	F	275	291	Right-handed alpha
Helix 82	AJ1	F	299	309	Right-handed alpha
Helix 83	AJ2	F	350	355	Right-handed alpha
Helix 84	AJ3	F	356	358	Right-handed 310
Helix 85	AJ4	G	55	57	Right-handed 310
Helix 86	AJ5	G	58	74	Right-handed alpha
Helix 87	AJ6	G	79	91	Right-handed alpha
Helix 88	AJ7	G	97	119	Right-handed alpha
Helix 89	AJ8	G	122	127	Right-handed alpha
Helix 90	AJ9	G	143	158	Right-handed alpha
Helix 91	AK1	G	171	187	Right-handed alpha
Helix 92	AK2	G	201	216	Right-handed alpha
Helix 93	AK3	G	228	238	Right-handed alpha
Helix 94	AK4	G	251	261	Right-handed alpha
Helix 95	AK5	G	275	291	Right-handed alpha
Helix 96	AK6	G	299	309	Right-handed alpha
Helix 97	AK7	G	350	355	Right-handed alpha
Helix 98	AK8	G	356	358	Right-handed 310
Helix 99	AK9	H	55	57	Right-handed 310
Helix 100	AL1	H	58	74	Right-handed alpha
Helix 101	AL2	H	79	91	Right-handed alpha
Helix 102	AL3	H	97	119	Right-handed alpha
Helix 103	AL4	H	122	127	Right-handed alpha
Helix 104	AL5	H	143	158	Right-handed alpha
Helix 105	AL6	H	171	187	Right-handed alpha
Helix 106	AL7	H	201	216	Right-handed alpha
Helix 107	AL8	H	228	238	Right-handed alpha
Helix 108	AL9	H	251	261	Right-handed alpha
Helix 109	AM1	H	275	291	Right-handed alpha
Helix 110	AM2	H	299	309	Right-handed alpha
Helix 111	AM3	H	350	355	Right-handed alpha
Helix 112	AM4	H	356	358	Right-handed 310

There are 24 sheets in PDB entry 6VIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	24	first strand
Strand 2	A	27	41	anti-parallel
Strand 3	A	46	52	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	243	245	parallel
Strand 3	A	219	221	parallel
Strand 4	A	191	195	parallel
Strand 5	A	162	166	parallel
Strand 6	A	134	139	parallel
Strand 7	A	316	318	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	243	245	parallel
Strand 3	A	219	221	parallel
Strand 4	A	191	195	parallel
Strand 5	A	162	166	parallel
Strand 6	A	134	139	parallel
Strand 7	A	336	338	anti-parallel
Strand 8	A	331	333	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	24	first strand
Strand 2	B	27	41	anti-parallel
Strand 3	B	46	52	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	243	245	parallel
Strand 3	B	219	221	parallel
Strand 4	B	191	195	parallel
Strand 5	B	162	166	parallel
Strand 6	B	134	139	parallel
Strand 7	B	316	318	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	243	245	parallel
Strand 3	B	219	221	parallel
Strand 4	B	191	195	parallel
Strand 5	B	162	166	parallel
Strand 6	B	134	139	parallel
Strand 7	B	336	338	anti-parallel
Strand 8	B	331	333	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	24	first strand
Strand 2	C	27	41	anti-parallel
Strand 3	C	46	52	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	243	245	parallel
Strand 3	C	219	221	parallel
Strand 4	C	191	195	parallel
Strand 5	C	162	166	parallel
Strand 6	C	134	139	parallel
Strand 7	C	316	318	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	243	245	parallel
Strand 3	C	219	221	parallel
Strand 4	C	191	195	parallel
Strand 5	C	162	166	parallel
Strand 6	C	134	139	parallel
Strand 7	C	336	338	anti-parallel
Strand 8	C	331	333	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	24	first strand
Strand 2	D	27	41	anti-parallel
Strand 3	D	46	52	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	243	245	parallel
Strand 3	D	219	221	parallel
Strand 4	D	191	195	parallel
Strand 5	D	162	166	parallel
Strand 6	D	134	139	parallel
Strand 7	D	316	318	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	243	245	parallel
Strand 3	D	219	221	parallel
Strand 4	D	191	195	parallel
Strand 5	D	162	166	parallel
Strand 6	D	134	139	parallel
Strand 7	D	336	338	anti-parallel
Strand 8	D	331	333	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	24	first strand
Strand 2	E	27	41	anti-parallel
Strand 3	E	46	52	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	267	first strand
Strand 2	E	243	245	parallel
Strand 3	E	220	221	parallel
Strand 4	E	191	195	parallel
Strand 5	E	162	166	parallel
Strand 6	E	134	139	parallel
Strand 7	E	316	318	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	267	first strand
Strand 2	E	243	245	parallel
Strand 3	E	220	221	parallel
Strand 4	E	191	195	parallel
Strand 5	E	162	166	parallel
Strand 6	E	134	139	parallel
Strand 7	E	336	338	anti-parallel
Strand 8	E	331	333	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	24	first strand
Strand 2	F	27	41	anti-parallel
Strand 3	F	46	52	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	267	first strand
Strand 2	F	243	245	parallel
Strand 3	F	219	221	parallel
Strand 4	F	191	195	parallel
Strand 5	F	162	166	parallel
Strand 6	F	134	139	parallel
Strand 7	F	316	318	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	267	first strand
Strand 2	F	243	245	parallel
Strand 3	F	219	221	parallel
Strand 4	F	191	195	parallel
Strand 5	F	162	166	parallel
Strand 6	F	134	139	parallel
Strand 7	F	336	338	anti-parallel
Strand 8	F	331	333	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	24	first strand
Strand 2	G	27	41	anti-parallel
Strand 3	G	46	52	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	266	267	first strand
Strand 2	G	243	245	parallel
Strand 3	G	219	221	parallel
Strand 4	G	191	195	parallel
Strand 5	G	162	166	parallel
Strand 6	G	134	139	parallel
Strand 7	G	316	318	parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	266	267	first strand
Strand 2	G	243	245	parallel
Strand 3	G	219	221	parallel
Strand 4	G	191	195	parallel
Strand 5	G	162	166	parallel
Strand 6	G	134	139	parallel
Strand 7	G	336	338	anti-parallel
Strand 8	G	331	333	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	24	first strand
Strand 2	H	27	41	anti-parallel
Strand 3	H	46	52	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	243	245	parallel
Strand 3	H	219	221	parallel
Strand 4	H	191	195	parallel
Strand 5	H	162	166	parallel
Strand 6	H	134	139	parallel
Strand 7	H	316	318	parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	243	245	parallel
Strand 3	H	219	221	parallel
Strand 4	H	191	195	parallel
Strand 5	H	162	166	parallel
Strand 6	H	134	139	parallel
Strand 7	H	336	338	anti-parallel
Strand 8	H	331	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VIM