Analysis of interatomic Contacts of Structural Units in PDB entry:
6VIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VIN entry

There are 2 chains in PDB entry 6VIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASP 376
B
 THR 2ASP 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6VIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 68Right-handed alpha
Helix 2
AA2
A
69 79Right-handed alpha
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
202 204Right-handed 310
Helix 6
AA6
A
205 227Right-handed alpha
Helix 7
AA7
A
229 243Right-handed alpha
Helix 8
AA8
A
286 301Right-handed alpha
Helix 9
AA9
A
315 326Right-handed alpha
Helix 10
AB1
A
337 368Right-handed alpha
Helix 11
AB2
B
63 69Right-handed alpha
Helix 12
AB3
B
69 78Right-handed alpha
Helix 13
AB4
B
98 102Right-handed 310
Helix 14
AB5
B
206 226Right-handed alpha
Helix 15
AB6
B
229 244Right-handed alpha
Helix 16
AB7
B
286 303Right-handed alpha
Helix 17
AB8
B
315 326Right-handed alpha
Helix 18
AB9
B
337 365Right-handed alpha
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There are 4 sheets in PDB entry 6VIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 151first strand
Strand 2
A
190 199anti-parallel
Strand 3
A
3 9anti-parallel
Strand 4
A
14 20anti-parallel
Strand 5
A
263 269anti-parallel
Strand 6
A
274 281anti-parallel
Strand 7
A
312 314parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
110 117anti-parallel
Strand 4
A
132 140anti-parallel
Strand 5
A
180 183anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 151first strand
Strand 2
B
190 199anti-parallel
Strand 3
B
3 9anti-parallel
Strand 4
B
14 20anti-parallel
Strand 5
B
263 269anti-parallel
Strand 6
B
274 281anti-parallel
Strand 7
B
312 314parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
54 58anti-parallel
Strand 3
B
110 117anti-parallel
Strand 4
B
132 140anti-parallel
Strand 5
B
175 183anti-parallel
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