Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VJ2 entry

There are 4 chains in PDB entry 6VJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 31	THR 301
B	ALA 31	GLN 300
C	SER 32	GLN 300
D	SER 32	THR 301

There are 56 helices in PDB entry 6VJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	55	Right-handed alpha
Helix 2	AA2	A	59	78	Right-handed alpha
Helix 3	AA3	A	79	81	Right-handed 310
Helix 4	AA4	A	82	98	Right-handed alpha
Helix 5	AA5	A	100	109	Right-handed alpha
Helix 6	AA6	A	111	137	Right-handed alpha
Helix 7	AA7	A	139	149	Right-handed alpha
Helix 8	AA8	A	163	176	Right-handed alpha
Helix 9	AA9	A	177	188	Right-handed alpha
Helix 10	AB1	A	203	211	Right-handed alpha
Helix 11	AB2	A	248	251	Right-handed 310
Helix 12	AB3	A	252	266	Right-handed alpha
Helix 13	AB4	A	267	282	Right-handed alpha
Helix 14	AB5	A	288	295	Right-handed 310
Helix 15	AB6	B	45	55	Right-handed alpha
Helix 16	AB7	B	59	78	Right-handed alpha
Helix 17	AB8	B	79	81	Right-handed 310
Helix 18	AB9	B	82	98	Right-handed alpha
Helix 19	AC1	B	100	109	Right-handed alpha
Helix 20	AC2	B	111	137	Right-handed alpha
Helix 21	AC3	B	139	149	Right-handed alpha
Helix 22	AC4	B	163	176	Right-handed alpha
Helix 23	AC5	B	177	188	Right-handed alpha
Helix 24	AC6	B	203	211	Right-handed alpha
Helix 25	AC7	B	248	251	Right-handed 310
Helix 26	AC8	B	252	266	Right-handed alpha
Helix 27	AC9	B	267	282	Right-handed alpha
Helix 28	AD1	B	288	292	Right-handed 310
Helix 29	AD2	C	45	55	Right-handed alpha
Helix 30	AD3	C	59	78	Right-handed alpha
Helix 31	AD4	C	79	81	Right-handed 310
Helix 32	AD5	C	82	98	Right-handed alpha
Helix 33	AD6	C	100	109	Right-handed alpha
Helix 34	AD7	C	111	137	Right-handed alpha
Helix 35	AD8	C	139	148	Right-handed alpha
Helix 36	AD9	C	163	177	Right-handed alpha
Helix 37	AE1	C	177	188	Right-handed alpha
Helix 38	AE2	C	203	211	Right-handed alpha
Helix 39	AE3	C	248	251	Right-handed 310
Helix 40	AE4	C	252	266	Right-handed alpha
Helix 41	AE5	C	267	282	Right-handed alpha
Helix 42	AE6	C	288	292	Right-handed 310
Helix 43	AE7	D	45	55	Right-handed alpha
Helix 44	AE8	D	59	78	Right-handed alpha
Helix 45	AE9	D	79	81	Right-handed 310
Helix 46	AF1	D	82	98	Right-handed alpha
Helix 47	AF2	D	100	109	Right-handed alpha
Helix 48	AF3	D	111	137	Right-handed alpha
Helix 49	AF4	D	139	148	Right-handed alpha
Helix 50	AF5	D	163	177	Right-handed alpha
Helix 51	AF6	D	177	188	Right-handed alpha
Helix 52	AF7	D	203	211	Right-handed alpha
Helix 53	AF8	D	248	251	Right-handed 310
Helix 54	AF9	D	252	266	Right-handed alpha
Helix 55	AG1	D	267	282	Right-handed alpha
Helix 56	AG2	D	288	292	Right-handed 310

There are 8 sheets in PDB entry 6VJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	34	38	anti-parallel
Strand 3	A	285	286	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	232	241	anti-parallel
Strand 4	A	222	225	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	285	286	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	195	first strand
Strand 2	B	154	159	anti-parallel
Strand 3	B	232	241	anti-parallel
Strand 4	B	222	225	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	34	38	anti-parallel
Strand 3	C	285	286	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	195	first strand
Strand 2	C	154	159	anti-parallel
Strand 3	C	232	241	anti-parallel
Strand 4	C	222	225	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	34	38	anti-parallel
Strand 3	D	285	286	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	195	first strand
Strand 2	D	154	159	anti-parallel
Strand 3	D	232	241	anti-parallel
Strand 4	D	222	225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJ2