Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VJ5 entry

There are 3 chains in PDB entry 6VJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7GLU 91
B
 MET 1ALA 174
C
 THR 8SER 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6VJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 37Right-handed alpha
Helix 2
AA2
A
45 85Right-handed alpha
Helix 3
AA3
B
2 6Right-handed 310
Helix 4
AA4
B
7 17Right-handed alpha
Helix 5
AA5
B
21 55Right-handed alpha
Helix 6
AA6
B
58 103Right-handed alpha
Helix 7
AA7
B
105 121Right-handed alpha
Helix 8
AA8
B
128 163Right-handed alpha
Helix 9
AA9
C
14 24Right-handed alpha
Helix 10
AB1
C
30 34Right-handed 310
Helix 11
AB2
C
44 49Right-handed 310
Helix 12
AB3
C
50 59Right-handed alpha
Helix 13
AB4
C
68 80Right-handed alpha
Helix 14
AB5
C
146 160Right-handed alpha
Helix 15
AB6
C
176 189Right-handed alpha
Helix 16
AB7
C
196 201Right-handed alpha
Helix 17
AB8
C
205 218Right-handed alpha
Helix 18
AB9
C
274 287Right-handed alpha
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There are 3 sheets in PDB entry 6VJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
136 141anti-parallel
Strand 3
C
126 133anti-parallel
Strand 4
C
115 123anti-parallel
Strand 5
C
83 91anti-parallel
Strand 6
C
221 231anti-parallel
Strand 7
C
242 247anti-parallel
Strand 8
C
250 256anti-parallel
Strand 9
C
267 272anti-parallel
Strand 10
C
172 175anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
136 141anti-parallel
Strand 3
C
126 133anti-parallel
Strand 4
C
115 123anti-parallel
Strand 5
C
83 91anti-parallel
Strand 6
C
221 231anti-parallel
Strand 7
C
234 237anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
66 67anti-parallel
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