Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VJ6 entry

There are 2 chains in PDB entry 6VJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 23LYS 280
B
 SER 23LYS 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6VJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 67Right-handed alpha
Helix 2
AA2
A
70 86Right-handed alpha
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
94 97Right-handed 310
Helix 5
AA5
A
100 120Right-handed alpha
Helix 6
AA6
A
123 129Right-handed alpha
Helix 7
AA7
A
144 157Right-handed alpha
Helix 8
AA8
A
160 169Right-handed alpha
Helix 9
AA9
A
174 178Right-handed 310
Helix 10
AB1
A
190 199Right-handed alpha
Helix 11
AB2
A
228 247Right-handed alpha
Helix 12
AB3
A
247 261Right-handed alpha
Helix 13
AB4
A
268 279Right-handed 310
Helix 14
AB5
B
38 67Right-handed alpha
Helix 15
AB6
B
70 86Right-handed alpha
Helix 16
AB7
B
88 94Right-handed alpha
Helix 17
AB8
B
100 120Right-handed alpha
Helix 18
AB9
B
123 129Right-handed alpha
Helix 19
AC1
B
144 157Right-handed alpha
Helix 20
AC2
B
160 169Right-handed alpha
Helix 21
AC3
B
174 178Right-handed 310
Helix 22
AC4
B
190 199Right-handed alpha
Helix 23
AC5
B
228 231Right-handed 310
Helix 24
AC6
B
232 247Right-handed alpha
Helix 25
AC7
B
247 261Right-handed alpha
Helix 26
AC8
B
268 272Right-handed 310
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There are 4 sheets in PDB entry 6VJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
36 37anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 142first strand
Strand 2
A
214 223anti-parallel
Strand 3
A
209 211anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
36 37anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 142first strand
Strand 2
B
214 223anti-parallel
Strand 3
B
209 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il