Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VJB entry

There is 1 chain in PDB entry 6VJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 118	ILE 1519

There are 23 helices in PDB entry 6VJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	126	131	Right-handed alpha
Helix 2	AA2	A	132	137	Right-handed alpha
Helix 3	AA3	A	173	185	Right-handed alpha
Helix 4	AA4	A	273	277	Right-handed 310
Helix 5	AA5	A	278	289	Right-handed alpha
Helix 6	AA6	A	324	339	Right-handed alpha
Helix 7	AA7	A	358	371	Right-handed alpha
Helix 8	AA8	A	430	433	Right-handed 310
Helix 9	AA9	A	435	440	Right-handed 310
Helix 10	AB1	A	452	456	Right-handed 310
Helix 11	AB2	A	496	508	Right-handed alpha
Helix 12	AB3	A	545	553	Right-handed alpha
Helix 13	AB4	A	615	638	Right-handed alpha
Helix 14	AB5	A	642	657	Right-handed alpha
Helix 15	AB6	A	671	676	Right-handed alpha
Helix 16	AB7	A	681	688	Right-handed alpha
Helix 17	AB8	A	778	786	Right-handed alpha
Helix 18	AB9	A	819	823	Right-handed 310
Helix 19	AC1	A	829	836	Right-handed alpha
Helix 20	AC2	A	1100	1103	Right-handed 310
Helix 21	AC3	A	1240	1244	Right-handed 310
Helix 22	AC4	A	1368	1370	Right-handed 310
Helix 23	AC5	A	1388	1393	Right-handed alpha

There are 22 sheets in PDB entry 6VJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	201	first strand
Strand 2	A	309	314	parallel
Strand 3	A	146	151	parallel
Strand 4	A	342	345	parallel
Strand 5	A	374	378	parallel
Strand 6	A	412	418	parallel
Strand 7	A	594	599	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	424	first strand
Strand 2	A	566	569	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	427	428	anti-parallel
Strand 3	A	556	561	anti-parallel
Strand 4	A	466	471	anti-parallel
Strand 5	A	487	490	parallel
Strand 6	A	512	515	parallel
Strand 7	A	542	544	parallel
Strand 8	A	445	446	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	604	first strand
Strand 2	A	610	613	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	693	first strand
Strand 2	A	709	718	anti-parallel
Strand 3	A	766	774	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	706	first strand
Strand 2	A	809	817	parallel
Strand 3	A	790	800	anti-parallel
Strand 4	A	724	738	anti-parallel
Strand 5	A	743	761	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	880	882	first strand
Strand 2	A	860	864	anti-parallel
Strand 3	A	918	922	anti-parallel
Strand 4	A	970	977	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	885	887	first strand
Strand 2	A	893	895	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	907	first strand
Strand 2	A	1008	1016	parallel
Strand 3	A	990	1000	anti-parallel
Strand 4	A	928	937	anti-parallel
Strand 5	A	948	949	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	907	first strand
Strand 2	A	1008	1016	parallel
Strand 3	A	990	1000	anti-parallel
Strand 4	A	928	937	anti-parallel
Strand 5	A	954	956	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1092	1093	first strand
Strand 2	A	1034	1037	anti-parallel
Strand 3	A	1025	1029	anti-parallel
Strand 4	A	1133	1136	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1084	first strand
Strand 2	A	1048	1056	anti-parallel
Strand 3	A	1105	1110	anti-parallel
Strand 4	A	1115	1119	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1064	1069	first strand
Strand 2	A	1074	1079	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1178	1182	first strand
Strand 2	A	1161	1166	anti-parallel
Strand 3	A	1201	1202	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1188	1189	first strand
Strand 2	A	1277	1283	parallel
Strand 3	A	1259	1266	anti-parallel
Strand 4	A	1214	1219	anti-parallel
Strand 5	A	1230	1231	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1294	1298	first strand
Strand 2	A	1301	1305	anti-parallel
Strand 3	A	1359	1361	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1348	1350	first strand
Strand 2	A	1317	1325	anti-parallel
Strand 3	A	1372	1378	anti-parallel
Strand 4	A	1383	1387	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1333	1336	first strand
Strand 2	A	1343	1346	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1435	1436	first strand
Strand 2	A	1439	1445	anti-parallel
Strand 3	A	1399	1406	anti-parallel
Strand 4	A	1480	1489	parallel
Strand 5	A	1462	1464	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1419	1423	first strand
Strand 2	A	1448	1456	anti-parallel
Strand 3	A	1469	1474	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1530	1536	first strand
Strand 2	A	1492	1499	anti-parallel
Strand 3	A	1565	1574	parallel
Strand 4	A	1550	1553	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1518	1521	first strand
Strand 2	A	1508	1512	anti-parallel
Strand 3	A	1539	1545	anti-parallel
Strand 4	A	1557	1559	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJB