Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VJC entry

There are 2 chains in PDB entry 6VJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 362
B
 ALA 2LYS 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6VJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 27Right-handed alpha
Helix 2
AA2
A
29 45Right-handed alpha
Helix 3
AA3
A
49 66Right-handed alpha
Helix 4
AA4
A
69 103Right-handed alpha
Helix 5
AA5
A
113 116Right-handed 310
Helix 6
AA6
A
120 143Right-handed alpha
Helix 7
AA7
A
148 172Right-handed alpha
Helix 8
AA8
A
176 180Right-handed 310
Helix 9
AA9
A
196 208Right-handed alpha
Helix 10
AB1
A
208 213Right-handed alpha
Helix 11
AB2
A
213 224Right-handed alpha
Helix 12
AB3
A
226 230Right-handed 310
Helix 13
AB4
A
231 257Right-handed alpha
Helix 14
AB5
A
258 263Right-handed alpha
Helix 15
AB6
A
275 285Right-handed alpha
Helix 16
AB7
A
286 295Right-handed alpha
Helix 17
AB8
A
301 315Right-handed alpha
Helix 18
AB9
A
316 343Right-handed alpha
Helix 19
AC1
A
343 358Right-handed alpha
Helix 20
AC2
B
3 27Right-handed alpha
Helix 21
AC3
B
29 45Right-handed alpha
Helix 22
AC4
B
49 66Right-handed alpha
Helix 23
AC5
B
69 102Right-handed alpha
Helix 24
AC6
B
113 116Right-handed 310
Helix 25
AC7
B
120 143Right-handed alpha
Helix 26
AC8
B
148 172Right-handed alpha
Helix 27
AC9
B
176 180Right-handed 310
Helix 28
AD1
B
196 208Right-handed alpha
Helix 29
AD2
B
208 213Right-handed alpha
Helix 30
AD3
B
213 224Right-handed alpha
Helix 31
AD4
B
226 230Right-handed 310
Helix 32
AD5
B
231 257Right-handed alpha
Helix 33
AD6
B
258 263Right-handed alpha
Helix 34
AD7
B
275 285Right-handed alpha
Helix 35
AD8
B
286 297Right-handed alpha
Helix 36
AD9
B
301 315Right-handed alpha
Helix 37
AE1
B
316 343Right-handed alpha
Helix 38
AE2
B
343 358Right-handed alpha
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There are 2 sheets in PDB entry 6VJC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
110 111anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
110 111anti-parallel
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