Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VJI entry

There are 2 chains in PDB entry 6VJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5GLU 326
B
 PRO 5ALA 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6VJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
16 18Right-handed 310
Helix 3
AA3
A
33 38Right-handed 310
Helix 4
AA4
A
60 64Right-handed 310
Helix 5
AA5
A
205 214Right-handed alpha
Helix 6
AA6
A
218 224Right-handed alpha
Helix 7
AA7
A
225 230Right-handed alpha
Helix 8
AA8
A
233 244Right-handed alpha
Helix 9
AA9
A
256 280Right-handed alpha
Helix 10
AB1
B
6 15Right-handed alpha
Helix 11
AB2
B
16 18Right-handed 310
Helix 12
AB3
B
33 38Right-handed 310
Helix 13
AB4
B
60 64Right-handed 310
Helix 14
AB5
B
205 214Right-handed alpha
Helix 15
AB6
B
218 224Right-handed alpha
Helix 16
AB7
B
225 230Right-handed alpha
Helix 17
AB8
B
233 244Right-handed alpha
Helix 18
AB9
B
256 280Right-handed alpha
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There are 5 sheets in PDB entry 6VJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
177 188anti-parallel
Strand 4
A
133 147anti-parallel
Strand 5
A
51 57anti-parallel
Strand 6
A
41 47anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
313 317anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
169 172anti-parallel
Strand 3
B
177 180anti-parallel
Strand 4
B
145 147anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 47first strand
Strand 2
B
51 57anti-parallel
Strand 3
B
133 139anti-parallel
Strand 4
B
183 188anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 305first strand
Strand 2
B
313 317anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il