Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VJK entry

There are 12 chains in PDB entry 6VJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 15	SER 136
B	ALA 15	LYS 132
C	ALA 15	LYS 134
D	GLU 14	SER 136
E	GLY 16	SER 301
F	GLU 14	SER 136
G	GLU 14	SER 302
H	GLU 14	SER 136
I	ALA 15	PRO 303
J	GLY 16	LYS 134
K	ALA 15	LYS 305
L	ALA 15	VAL 133

There are 12 helices in PDB entry 6VJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	115	121	Right-handed 310
Helix 2	AA2	B	115	121	Right-handed 310
Helix 3	AA3	C	115	121	Right-handed 310
Helix 4	AA4	D	118	121	Right-handed 310
Helix 5	AA5	E	118	121	Right-handed 310
Helix 6	AA6	F	115	121	Right-handed 310
Helix 7	AA7	G	115	121	Right-handed 310
Helix 8	AA8	H	118	121	Right-handed 310
Helix 9	AA9	I	115	121	Right-handed 310
Helix 10	AB1	J	118	121	Right-handed 310
Helix 11	AB2	K	115	121	Right-handed 310
Helix 12	AB3	L	118	121	Right-handed 310

There are 12 sheets in PDB entry 6VJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	23	first strand
Strand 2	A	28	33	anti-parallel
Strand 3	A	38	44	anti-parallel
Strand 4	A	54	60	anti-parallel
Strand 5	A	71	80	anti-parallel
Strand 6	A	85	97	anti-parallel
Strand 7	A	103	112	anti-parallel
Strand 8	A	123	131	anti-parallel
Strand 9	A	19	23	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	28	33	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	54	60	anti-parallel
Strand 5	B	71	80	anti-parallel
Strand 6	B	85	97	anti-parallel
Strand 7	B	103	112	anti-parallel
Strand 8	B	123	131	anti-parallel
Strand 9	B	19	23	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	23	first strand
Strand 2	C	28	33	anti-parallel
Strand 3	C	38	44	anti-parallel
Strand 4	C	54	60	anti-parallel
Strand 5	C	71	80	anti-parallel
Strand 6	C	85	97	anti-parallel
Strand 7	C	103	112	anti-parallel
Strand 8	C	123	131	anti-parallel
Strand 9	C	19	23	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	28	33	anti-parallel
Strand 3	D	38	44	anti-parallel
Strand 4	D	54	60	anti-parallel
Strand 5	D	71	80	anti-parallel
Strand 6	D	85	97	anti-parallel
Strand 7	D	103	112	anti-parallel
Strand 8	D	123	130	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	23	first strand
Strand 2	E	28	33	anti-parallel
Strand 3	E	38	44	anti-parallel
Strand 4	E	54	60	anti-parallel
Strand 5	E	71	80	anti-parallel
Strand 6	E	85	97	anti-parallel
Strand 7	E	103	112	anti-parallel
Strand 8	E	123	131	anti-parallel
Strand 9	E	19	23	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	23	first strand
Strand 2	F	28	33	anti-parallel
Strand 3	F	38	44	anti-parallel
Strand 4	F	54	60	anti-parallel
Strand 5	F	71	80	anti-parallel
Strand 6	F	85	97	anti-parallel
Strand 7	F	103	112	anti-parallel
Strand 8	F	123	131	anti-parallel
Strand 9	F	19	23	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	23	first strand
Strand 2	G	28	33	anti-parallel
Strand 3	G	38	44	anti-parallel
Strand 4	G	54	60	anti-parallel
Strand 5	G	71	80	anti-parallel
Strand 6	G	85	97	anti-parallel
Strand 7	G	103	112	anti-parallel
Strand 8	G	123	131	anti-parallel
Strand 9	G	19	23	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	23	first strand
Strand 2	H	28	33	anti-parallel
Strand 3	H	38	44	anti-parallel
Strand 4	H	54	60	anti-parallel
Strand 5	H	71	80	anti-parallel
Strand 6	H	85	97	anti-parallel
Strand 7	H	103	112	anti-parallel
Strand 8	H	123	131	anti-parallel
Strand 9	H	19	23	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	23	first strand
Strand 2	I	28	33	anti-parallel
Strand 3	I	38	44	anti-parallel
Strand 4	I	54	60	anti-parallel
Strand 5	I	71	80	anti-parallel
Strand 6	I	85	97	anti-parallel
Strand 7	I	103	112	anti-parallel
Strand 8	I	123	131	anti-parallel
Strand 9	I	19	23	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	23	first strand
Strand 2	J	28	33	anti-parallel
Strand 3	J	38	44	anti-parallel
Strand 4	J	54	60	anti-parallel
Strand 5	J	71	80	anti-parallel
Strand 6	J	85	97	anti-parallel
Strand 7	J	103	112	anti-parallel
Strand 8	J	123	131	anti-parallel
Strand 9	J	19	23	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	28	33	anti-parallel
Strand 3	K	38	44	anti-parallel
Strand 4	K	54	60	anti-parallel
Strand 5	K	71	80	anti-parallel
Strand 6	K	85	97	anti-parallel
Strand 7	K	103	112	anti-parallel
Strand 8	K	123	131	anti-parallel
Strand 9	K	19	23	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	22	first strand
Strand 2	L	28	33	anti-parallel
Strand 3	L	38	44	anti-parallel
Strand 4	L	54	60	anti-parallel
Strand 5	L	71	80	anti-parallel
Strand 6	L	85	97	anti-parallel
Strand 7	L	103	112	anti-parallel
Strand 8	L	123	131	anti-parallel
Strand 9	L	19	22	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJK