Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VJM entry

There are 2 chains in PDB entry 6VJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 165	THR 862
B	SER 53	THR 749

There are 47 helices in PDB entry 6VJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	184	201	Right-handed alpha
Helix 2	AA2	A	221	234	Right-handed alpha
Helix 3	AA3	A	247	257	Right-handed alpha
Helix 4	AA4	A	258	260	Right-handed 310
Helix 5	AA5	A	271	276	Right-handed 310
Helix 6	AA6	A	289	292	Right-handed 310
Helix 7	AA7	A	293	305	Right-handed alpha
Helix 8	AA8	A	316	331	Right-handed alpha
Helix 9	AA9	A	332	334	Right-handed 310
Helix 10	AB1	A	347	357	Right-handed alpha
Helix 11	AB2	A	367	381	Right-handed alpha
Helix 12	AB3	A	411	419	Right-handed alpha
Helix 13	AB4	A	442	454	Right-handed alpha
Helix 14	AB5	A	467	485	Right-handed alpha
Helix 15	AB6	A	503	515	Right-handed alpha
Helix 16	AB7	A	589	615	Right-handed alpha
Helix 17	AB8	A	627	644	Right-handed alpha
Helix 18	AB9	A	658	693	Right-handed alpha
Helix 19	AC1	A	708	732	Right-handed alpha
Helix 20	AC2	A	766	791	Right-handed alpha
Helix 21	AC3	A	801	825	Right-handed alpha
Helix 22	AC4	A	832	853	Right-handed alpha
Helix 23	AC5	A	853	861	Right-handed alpha
Helix 24	AC6	B	69	91	Right-handed alpha
Helix 25	AC7	B	109	124	Right-handed alpha
Helix 26	AC8	B	135	146	Right-handed alpha
Helix 27	AC9	B	160	165	Right-handed 310
Helix 28	AD1	B	178	181	Right-handed 310
Helix 29	AD2	B	182	193	Right-handed alpha
Helix 30	AD3	B	205	220	Right-handed alpha
Helix 31	AD4	B	235	246	Right-handed alpha
Helix 32	AD5	B	256	269	Right-handed alpha
Helix 33	AD6	B	288	292	Right-handed 310
Helix 34	AD7	B	304	309	Right-handed alpha
Helix 35	AD8	B	334	346	Right-handed alpha
Helix 36	AD9	B	354	378	Right-handed alpha
Helix 37	AE1	B	393	405	Right-handed alpha
Helix 38	AE2	B	478	509	Right-handed alpha
Helix 39	AE3	B	518	542	Right-handed alpha
Helix 40	AE4	B	546	550	Right-handed 310
Helix 41	AE5	B	551	583	Right-handed alpha
Helix 42	AE6	B	591	619	Right-handed alpha
Helix 43	AE7	B	653	678	Right-handed alpha
Helix 44	AE8	B	679	681	Right-handed 310
Helix 45	AE9	B	691	712	Right-handed alpha
Helix 46	AF1	B	718	741	Right-handed alpha
Helix 47	AF2	B	742	748	Right-handed alpha

There are 11 sheets in PDB entry 6VJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	175	first strand
Strand 2	A	209	216	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	263	266	parallel
Strand 3	A	283	285	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	343	first strand
Strand 2	A	308	314	parallel
Strand 3	A	361	365	parallel
Strand 4	A	389	393	parallel
Strand 5	A	422	425	parallel
Strand 6	A	539	542	anti-parallel
Strand 7	A	547	551	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	520	first strand
Strand 2	A	523	526	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	583	first strand
Strand 2	A	752	757	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	736	first strand
Strand 2	A	761	762	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	105	first strand
Strand 2	B	55	62	parallel
Strand 3	B	130	132	parallel
Strand 4	B	153	155	parallel
Strand 5	B	172	174	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	230	first strand
Strand 2	B	197	202	parallel
Strand 3	B	250	254	parallel
Strand 4	B	278	281	parallel
Strand 5	B	314	319	parallel
Strand 6	B	426	431	anti-parallel
Strand 7	B	436	440	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	410	first strand
Strand 2	B	413	415	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	443	first strand
Strand 2	B	448	449	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	474	first strand
Strand 2	B	642	647	parallel
Strand 3	B	624	627	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJM