Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VJP entry

There are 2 chains in PDB entry 6VJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 445ALA 599
B
 SER 445THR 597
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6VJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
452 466Right-handed alpha
Helix 2
AA2
A
478 490Right-handed alpha
Helix 3
AA3
A
491 494Right-handed 310
Helix 4
AA4
A
511 522Right-handed alpha
Helix 5
AA5
A
538 553Right-handed alpha
Helix 6
AA6
A
560 566Right-handed alpha
Helix 7
AA7
A
568 572Right-handed 310
Helix 8
AA8
A
580 598Right-handed alpha
Helix 9
AA9
B
452 466Right-handed alpha
Helix 10
AB1
B
478 490Right-handed alpha
Helix 11
AB2
B
491 494Right-handed 310
Helix 12
AB3
B
511 522Right-handed alpha
Helix 13
AB4
B
538 553Right-handed alpha
Helix 14
AB5
B
560 565Right-handed alpha
Helix 15
AB6
B
568 572Right-handed 310
Helix 16
AB7
B
580 597Right-handed alpha
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There are 2 sheets in PDB entry 6VJP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
448 451parallel
Strand 3
A
499 503parallel
Strand 4
A
526 530parallel
Strand 5
A
556 559parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 473first strand
Strand 2
B
448 451parallel
Strand 3
B
499 503parallel
Strand 4
B
526 530parallel
Strand 5
B
556 559parallel
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