Analysis of interatomic Contacts of Structural Units in PDB entry:
6VJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VJU entry

There are 3 chains in PDB entry 6VJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8VAL 50
A
 ASP 52LEU 324
B
 HIS 8LEU 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6VJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed 310
Helix 2
AA2
A
43 45Right-handed 310
Helix 3
AA3
A
51 65Right-handed alpha
Helix 4
AA4
A
80 94Right-handed alpha
Helix 5
AA5
A
106 116Right-handed alpha
Helix 6
AA6
A
134 146Right-handed alpha
Helix 7
AA7
A
158 167Right-handed alpha
Helix 8
AA8
A
167 177Right-handed alpha
Helix 9
AA9
A
190 204Right-handed alpha
Helix 10
AB1
A
243 247Right-handed 310
Helix 11
AB2
A
254 270Right-handed alpha
Helix 12
AB3
A
274 288Right-handed alpha
Helix 13
AB4
A
289 291Right-handed 310
Helix 14
AB5
A
304 309Right-handed 310
Helix 15
AB6
A
314 321Right-handed alpha
Helix 16
AB7
B
13 18Right-handed 310
Helix 17
AB8
B
43 45Right-handed 310
Helix 18
AB9
B
51 65Right-handed alpha
Helix 19
AC1
B
80 94Right-handed alpha
Helix 20
AC2
B
106 116Right-handed alpha
Helix 21
AC3
B
134 146Right-handed alpha
Helix 22
AC4
B
158 167Right-handed alpha
Helix 23
AC5
B
167 177Right-handed alpha
Helix 24
AC6
B
190 204Right-handed alpha
Helix 25
AC7
B
243 247Right-handed 310
Helix 26
AC8
B
254 270Right-handed alpha
Helix 27
AC9
B
274 288Right-handed alpha
Helix 28
AD1
B
289 291Right-handed 310
Helix 29
AD2
B
304 309Right-handed 310
Helix 30
AD3
B
314 321Right-handed alpha
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There are 4 sheets in PDB entry 6VJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 253first strand
Strand 2
A
208 214parallel
Strand 3
A
182 186parallel
Strand 4
A
296 301parallel
Strand 5
A
36 41parallel
Strand 6
A
23 25anti-parallel
Strand 7
B
10 11parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
96 102parallel
Strand 3
A
73 77parallel
Strand 4
A
149 150parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
296 301parallel
Strand 4
B
182 186parallel
Strand 5
B
208 214parallel
Strand 6
B
249 253parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
96 102parallel
Strand 3
B
73 77parallel
Strand 4
B
149 150parallel
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