Analysis of interatomic Contacts of Structural Units in PDB entry:
6VK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VK1 entry

There are 2 chains in PDB entry 6VK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1ASN 324
A
 PRO 26THR 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 6VK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 31Right-handed alpha
Helix 2
AA2
B
34 43Right-handed alpha
Helix 3
AA3
B
44 71Right-handed alpha
Helix 4
AA4
B
75 98Right-handed alpha
Helix 5
AA5
B
99 100Right-handed 310
Helix 6
AA6
B
101 104Right-handed 310
Helix 7
AA7
B
105 135Right-handed alpha
Helix 8
AA8
B
143 175Right-handed alpha
Helix 9
AA9
B
179 220Right-handed alpha
Helix 10
AB1
B
266 294Right-handed alpha
Helix 11
AB2
B
297 324Right-handed alpha
Helix 12
AB3
A
27 35Right-handed alpha
Helix 13
AB4
A
42 47Right-handed alpha
Helix 14
AB5
A
66 81Right-handed alpha
Helix 15
AB6
A
83 100Right-handed alpha
Helix 16
AB7
A
104 116Right-handed alpha
Helix 17
AB8
A
125 138Right-handed alpha
Helix 18
AB9
A
142 156Right-handed alpha
Helix 19
AC1
A
170 184Right-handed alpha
Helix 20
AC2
A
186 200Right-handed alpha
Helix 21
AC3
A
206 224Right-handed alpha
Helix 22
AC4
A
226 232Right-handed alpha
Helix 23
AC5
A
315 329Right-handed alpha
Helix 24
AC6
A
339 355Right-handed alpha
Helix 25
AC7
A
356 361Right-handed 310
Helix 26
AC8
A
364 383Right-handed alpha
Helix 27
AC9
A
390 407Right-handed alpha
Helix 28
AD1
A
412 426Right-handed alpha
Helix 29
AD2
A
429 441Right-handed alpha
Helix 30
AD3
A
448 461Right-handed alpha
Helix 31
AD4
A
462 465Right-handed 310
Helix 32
AD5
A
468 480Right-handed alpha
Helix 33
AD6
A
481 495Right-handed alpha
Helix 34
AD7
A
501 517Right-handed alpha
Helix 35
AD8
A
522 532Right-handed alpha
Helix 36
AD9
A
535 548Right-handed alpha
Helix 37
AE1
A
551 563Right-handed alpha
Helix 38
AE2
A
576 594Right-handed alpha
Helix 39
AE3
A
596 609Right-handed alpha
Helix 40
AE4
A
614 624Right-handed alpha
Helix 41
AE5
A
627 639Right-handed alpha
Helix 42
AE6
A
647 662Right-handed alpha
Helix 43
AE7
A
665 682Right-handed alpha
Back to top of page
There are no sheets in PDB entry 6VK1
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il