Analysis of interatomic Contacts of Structural Units in PDB entry:
6VK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VK3 entry

There are 2 chains in PDB entry 6VK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 26THR 686
B
 PRO 25ILE 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6VK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
42 47Right-handed alpha
Helix 3
AA3
A
66 81Right-handed alpha
Helix 4
AA4
A
83 100Right-handed alpha
Helix 5
AA5
A
104 116Right-handed alpha
Helix 6
AA6
A
124 139Right-handed alpha
Helix 7
AA7
A
142 156Right-handed alpha
Helix 8
AA8
A
170 184Right-handed alpha
Helix 9
AA9
A
186 200Right-handed alpha
Helix 10
AB1
A
206 225Right-handed alpha
Helix 11
AB2
A
226 231Right-handed alpha
Helix 12
AB3
A
314 331Right-handed alpha
Helix 13
AB4
A
339 355Right-handed alpha
Helix 14
AB5
A
356 358Right-handed 310
Helix 15
AB6
A
362 383Right-handed alpha
Helix 16
AB7
A
390 407Right-handed alpha
Helix 17
AB8
A
412 423Right-handed alpha
Helix 18
AB9
A
429 442Right-handed alpha
Helix 19
AC1
A
448 461Right-handed alpha
Helix 20
AC2
A
462 465Right-handed 310
Helix 21
AC3
A
468 480Right-handed alpha
Helix 22
AC4
A
481 494Right-handed alpha
Helix 23
AC5
A
501 517Right-handed alpha
Helix 24
AC6
A
522 532Right-handed alpha
Helix 25
AC7
A
535 550Right-handed alpha
Helix 26
AC8
A
551 563Right-handed alpha
Helix 27
AC9
A
576 594Right-handed alpha
Helix 28
AD1
A
595 609Right-handed alpha
Helix 29
AD2
A
612 624Right-handed alpha
Helix 30
AD3
A
627 640Right-handed alpha
Helix 31
AD4
A
647 662Right-handed alpha
Helix 32
AD5
A
665 684Right-handed alpha
Helix 33
AD6
B
41 49Right-handed alpha
Helix 34
AD7
B
52 58Right-handed alpha
Helix 35
AD8
B
93 114Right-handed alpha
Helix 36
AD9
B
236 245Right-handed 310
Helix 37
AE1
B
269 276Right-handed alpha
Helix 38
AE2
B
314 332Right-handed alpha
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There are 6 sheets in PDB entry 6VK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
289 291parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
254 259parallel
Strand 3
B
70 72anti-parallel
Strand 4
B
60 62anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
125 129anti-parallel
Strand 3
B
136 138anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 176first strand
Strand 2
B
181 187anti-parallel
Strand 3
B
201 208anti-parallel
Strand 4
B
228 235parallel
Strand 5
B
217 223anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
286 291anti-parallel
Strand 3
B
299 302anti-parallel
Strand 4
B
347 355parallel
Strand 5
B
361 368anti-parallel
Strand 6
B
376 380anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
286 291anti-parallel
Strand 3
B
299 302anti-parallel
Strand 4
B
347 355parallel
Strand 5
B
395 396anti-parallel
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