Analysis of interatomic Contacts of Structural Units in PDB entry:
6VK5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VK5 entry

There are 8 chains in PDB entry 6VK5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 12	PHE 526
B	PRO 4	ASN 395
C	ALA 2	ALA 169
D	SER 2	ARG 133
E	ASP 12	PHE 526
F	PRO 4	ASN 395
G	ALA 2	ALA 169
H	SER 2	ILE 138

There are134 helices in PDB entry 6VK5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	30	Right-handed alpha
Helix 2	AA2	A	31	36	Right-handed 310
Helix 3	AA3	A	63	84	Right-handed alpha
Helix 4	AA4	A	84	90	Right-handed alpha
Helix 5	AA5	A	91	94	Right-handed 310
Helix 6	AA6	A	96	128	Right-handed alpha
Helix 7	AA7	A	130	162	Right-handed alpha
Helix 8	AA8	A	170	175	Right-handed alpha
Helix 9	AA9	A	178	188	Right-handed alpha
Helix 10	AB1	A	189	194	Right-handed alpha
Helix 11	AB2	A	199	204	Right-handed alpha
Helix 12	AB3	A	212	218	Right-handed alpha
Helix 13	AB4	A	218	227	Right-handed alpha
Helix 14	AB5	A	230	242	Right-handed alpha
Helix 15	AB6	A	242	260	Right-handed alpha
Helix 16	AB7	A	260	265	Right-handed alpha
Helix 17	AB8	A	266	293	Right-handed alpha
Helix 18	AB9	A	300	309	Right-handed alpha
Helix 19	AC1	A	311	317	Right-handed alpha
Helix 20	AC2	A	317	322	Right-handed alpha
Helix 21	AC3	A	323	325	Right-handed 310
Helix 22	AC4	A	331	353	Right-handed alpha
Helix 23	AC5	A	354	357	Right-handed 310
Helix 24	AC6	A	365	376	Right-handed alpha
Helix 25	AC7	A	382	394	Right-handed alpha
Helix 26	AC8	A	403	411	Right-handed alpha
Helix 27	AC9	A	450	460	Right-handed alpha
Helix 28	AD1	A	461	464	Right-handed 310
Helix 29	AD2	A	468	474	Right-handed alpha
Helix 30	AD3	A	477	485	Right-handed alpha
Helix 31	AD4	A	508	515	Right-handed alpha
Helix 32	AD5	B	16	27	Right-handed alpha
Helix 33	AD6	B	50	57	Right-handed alpha
Helix 34	AD7	B	87	91	Right-handed 310
Helix 35	AD8	B	97	101	Right-handed 310
Helix 36	AD9	B	108	134	Right-handed alpha
Helix 37	AE1	B	135	139	Right-handed 310
Helix 38	AE2	B	140	147	Right-handed alpha
Helix 39	AE3	B	147	173	Right-handed alpha
Helix 40	AE4	B	175	207	Right-handed alpha
Helix 41	AE5	B	214	224	Right-handed alpha
Helix 42	AE6	B	227	240	Right-handed alpha
Helix 43	AE7	B	243	254	Right-handed alpha
Helix 44	AE8	B	258	266	Right-handed alpha
Helix 45	AE9	B	267	273	Right-handed alpha
Helix 46	AF1	B	279	303	Right-handed alpha
Helix 47	AF2	B	312	339	Right-handed alpha
Helix 48	AF3	B	340	345	Right-handed 310
Helix 49	AF4	B	353	372	Right-handed alpha
Helix 50	AF5	B	373	376	Right-handed 310
Helix 51	AF6	B	381	391	Right-handed alpha
Helix 52	AF7	C	10	22	Right-handed alpha
Helix 53	AF8	C	25	41	Right-handed alpha
Helix 54	AF9	C	53	73	Right-handed alpha
Helix 55	AG1	C	74	81	Right-handed alpha
Helix 56	AG2	C	87	101	Right-handed alpha
Helix 57	AG3	C	104	120	Right-handed alpha
Helix 58	AG4	C	125	145	Right-handed alpha
Helix 59	AG5	C	152	161	Right-handed alpha
Helix 60	AG6	D	3	7	Right-handed 310
Helix 61	AG7	D	10	15	Right-handed 310
Helix 62	AG8	D	16	25	Right-handed alpha
Helix 63	AG9	D	26	30	Right-handed 310
Helix 64	AH1	D	45	55	Right-handed alpha
Helix 65	AH2	D	58	64	Right-handed alpha
Helix 66	AH3	D	88	96	Right-handed alpha
Helix 67	AH4	D	100	105	Right-handed alpha
Helix 68	AH5	E	24	30	Right-handed alpha
Helix 69	AH6	E	31	36	Right-handed 310
Helix 70	AH7	E	63	84	Right-handed alpha
Helix 71	AH8	E	84	90	Right-handed alpha
Helix 72	AH9	E	91	94	Right-handed 310
Helix 73	AI1	E	96	128	Right-handed alpha
Helix 74	AI2	E	130	162	Right-handed alpha
Helix 75	AI3	E	170	175	Right-handed alpha
Helix 76	AI4	E	178	188	Right-handed alpha
Helix 77	AI5	E	189	194	Right-handed alpha
Helix 78	AI6	E	199	204	Right-handed alpha
Helix 79	AI7	E	212	218	Right-handed alpha
Helix 80	AI8	E	218	227	Right-handed alpha
Helix 81	AI9	E	230	242	Right-handed alpha
Helix 82	AJ1	E	242	260	Right-handed alpha
Helix 83	AJ2	E	260	265	Right-handed alpha
Helix 84	AJ3	E	266	293	Right-handed alpha
Helix 85	AJ4	E	300	309	Right-handed alpha
Helix 86	AJ5	E	311	317	Right-handed alpha
Helix 87	AJ6	E	317	322	Right-handed alpha
Helix 88	AJ7	E	323	325	Right-handed 310
Helix 89	AJ8	E	331	353	Right-handed alpha
Helix 90	AJ9	E	354	357	Right-handed 310
Helix 91	AK1	E	365	376	Right-handed alpha
Helix 92	AK2	E	382	393	Right-handed alpha
Helix 93	AK3	E	403	411	Right-handed alpha
Helix 94	AK4	E	450	460	Right-handed alpha
Helix 95	AK5	E	461	464	Right-handed 310
Helix 96	AK6	E	468	474	Right-handed alpha
Helix 97	AK7	E	477	485	Right-handed alpha
Helix 98	AK8	E	508	516	Right-handed alpha
Helix 99	AK9	F	16	27	Right-handed alpha
Helix 100	AL1	F	50	57	Right-handed alpha
Helix 101	AL2	F	87	91	Right-handed 310
Helix 102	AL3	F	108	134	Right-handed alpha
Helix 103	AL4	F	135	139	Right-handed 310
Helix 104	AL5	F	140	147	Right-handed alpha
Helix 105	AL6	F	147	165	Right-handed alpha
Helix 106	AL7	F	165	173	Right-handed alpha
Helix 107	AL8	F	175	207	Right-handed alpha
Helix 108	AL9	F	214	224	Right-handed alpha
Helix 109	AM1	F	227	240	Right-handed alpha
Helix 110	AM2	F	243	253	Right-handed alpha
Helix 111	AM3	F	258	265	Right-handed alpha
Helix 112	AM4	F	267	273	Right-handed alpha
Helix 113	AM5	F	279	303	Right-handed alpha
Helix 114	AM6	F	312	339	Right-handed alpha
Helix 115	AM7	F	340	345	Right-handed 310
Helix 116	AM8	F	353	372	Right-handed alpha
Helix 117	AM9	F	373	376	Right-handed 310
Helix 118	AN1	F	381	391	Right-handed alpha
Helix 119	AN2	G	10	22	Right-handed alpha
Helix 120	AN3	G	25	41	Right-handed alpha
Helix 121	AN4	G	53	73	Right-handed alpha
Helix 122	AN5	G	74	81	Right-handed alpha
Helix 123	AN6	G	87	101	Right-handed alpha
Helix 124	AN7	G	104	120	Right-handed alpha
Helix 125	AN8	G	125	145	Right-handed alpha
Helix 126	AN9	G	152	161	Right-handed alpha
Helix 127	AO1	H	3	7	Right-handed 310
Helix 128	AO2	H	10	15	Right-handed 310
Helix 129	AO3	H	16	25	Right-handed alpha
Helix 130	AO4	H	26	30	Right-handed 310
Helix 131	AO5	H	45	55	Right-handed alpha
Helix 132	AO6	H	58	64	Right-handed alpha
Helix 133	AO7	H	88	96	Right-handed alpha
Helix 134	AO8	H	100	105	Right-handed alpha

There are 8 sheets in PDB entry 6VK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	424	425	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	448	first strand
Strand 2	A	437	441	anti-parallel
Strand 3	C	163	167	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	75	81	anti-parallel
Strand 3	D	37	43	anti-parallel
Strand 4	D	108	112	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	87	first strand
Strand 2	D	121	125	anti-parallel
Strand 3	D	114	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	416	417	first strand
Strand 2	E	424	425	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	444	448	first strand
Strand 2	E	437	441	anti-parallel
Strand 3	G	163	167	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	71	first strand
Strand 2	H	75	81	anti-parallel
Strand 3	H	37	43	anti-parallel
Strand 4	H	108	112	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	87	first strand
Strand 2	H	121	125	anti-parallel
Strand 3	H	114	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VK5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VK5