Analysis of interatomic Contacts of Structural Units in PDB entry:
6VKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VKF entry

There are 2 chains in PDB entry 6VKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 252GLY 509
B
 LYS 250GLY 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6VKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
256 272Right-handed alpha
Helix 2
AA2
A
282 292Right-handed alpha
Helix 3
AA3
A
296 309Right-handed alpha
Helix 4
AA4
A
366 369Right-handed 310
Helix 5
AA5
A
394 398Right-handed 310
Helix 6
AA6
A
473 477Right-handed 310
Helix 7
AA7
B
256 272Right-handed alpha
Helix 8
AA8
B
282 292Right-handed alpha
Helix 9
AA9
B
296 309Right-handed alpha
Helix 10
AB1
B
394 398Right-handed 310
Helix 11
AB2
B
409 411Right-handed 310
Helix 12
AB3
B
474 478Right-handed 310
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There are 9 sheets in PDB entry 6VKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
346 347anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 355first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
439 443anti-parallel
Strand 4
A
432 435anti-parallel
Strand 5
A
465 470anti-parallel
Strand 6
A
413 418anti-parallel
Strand 7
A
403 408anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
459 462anti-parallel
Strand 3
A
454 455anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
497 507parallel
Strand 3
A
480 491anti-parallel
Strand 4
A
425 428anti-parallel
Strand 5
A
447 448anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
497 507parallel
Strand 3
A
480 491anti-parallel
Strand 4
B
251 253anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
321 322anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 355first strand
Strand 2
B
360 364anti-parallel
Strand 3
B
439 443anti-parallel
Strand 4
B
432 435anti-parallel
Strand 5
B
465 470anti-parallel
Strand 6
B
413 418anti-parallel
Strand 7
B
403 408anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 376first strand
Strand 2
B
459 462anti-parallel
Strand 3
B
454 455anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
502 507parallel
Strand 3
B
480 485anti-parallel
Strand 4
B
425 428anti-parallel
Strand 5
B
447 448anti-parallel
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