Analysis of interatomic Contacts of Structural Units in PDB entry:
6VKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VKJ entry

There is 1 chain in PDB entry 6VKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5CYS 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6VKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 33Right-handed alpha
Helix 2
AA2
A
50 60Right-handed alpha
Helix 3
AA3
A
66 71Right-handed alpha
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
113 123Right-handed alpha
Helix 6
AA6
A
135 155Right-handed alpha
Helix 7
AA7
A
166 173Right-handed alpha
Helix 8
AA8
A
195 205Right-handed alpha
Helix 9
AA9
A
217 228Right-handed alpha
Helix 10
AB1
A
241 251Right-handed 310
Helix 11
AB2
A
252 256Right-handed 310
Helix 12
AB3
A
257 275Right-handed alpha
Helix 13
AB4
A
287 304Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6VKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
11 15anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
92 99anti-parallel
Strand 5
A
38 44parallel
Strand 6
A
125 131parallel
Strand 7
A
175 181parallel
Strand 8
A
231 235parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
192 193anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il