Analysis of interatomic Contacts of Structural Units in PDB entry:
6VKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VKM entry

There is 1 chain in PDB entry 6VKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 33THR 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6VKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 61Right-handed 310
Helix 2
AA2
A
71 74Right-handed 310
Helix 3
AA3
A
78 83Right-handed alpha
Helix 4
AA4
A
249 263Right-handed alpha
Helix 5
AA5
A
550 552Right-handed 310
Helix 6
AA6
A
553 576Right-handed alpha
Helix 7
AA7
A
583 598Right-handed alpha
Helix 8
AA8
A
612 620Right-handed alpha
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There are 5 sheets in PDB entry 6VKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
42 45anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 69first strand
Strand 2
A
177 185anti-parallel
Strand 3
A
159 161anti-parallel
Strand 4
A
165 167anti-parallel
Strand 5
A
96 98anti-parallel
Strand 6
A
580 581parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
151 154anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
515 520anti-parallel
Strand 3
A
543 548anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 114first strand
Strand 2
A
135 144parallel
Strand 3
A
216 223parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
240 243anti-parallel
Strand 6
A
273 275parallel
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