Analysis of interatomic Contacts of Structural Units in PDB entry:
6VKN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VKN entry

There are 12 chains in PDB entry 6VKN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 31	ARG 503
B	PHE 519	ASP 664
L	ARG 3	LYS 107
H	GLU 1	SER 112
C	ALA 31	ARG 503
E	PHE 519	ASP 664
J	ARG 3	LYS 107
G	GLU 1	SER 112
D	ALA 31	ARG 503
F	PHE 519	ASP 664
K	ARG 3	LYS 107
I	GLU 1	SER 112

There are 66 helices in PDB entry 6VKN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	72	Right-handed alpha
Helix 2	AA2	A	98	116	Right-handed alpha
Helix 3	AA3	A	122	126	Right-handed 310
Helix 4	AA4	A	139	151	Right-handed 310
Helix 5	AA5	A	334	351	Right-handed alpha
Helix 6	AA6	A	368	373	Right-handed alpha
Helix 7	AA7	A	387	391	Right-handed 310
Helix 8	AA8	A	474	479	Right-handed 310
Helix 9	AA9	A	482	484	Right-handed 310
Helix 10	AB1	B	523	528	Right-handed 310
Helix 11	AB2	B	531	535	Right-handed 310
Helix 12	AB3	B	536	542	Right-handed alpha
Helix 13	AB4	B	563	568	Right-handed alpha
Helix 14	AB5	B	570	596	Right-handed alpha
Helix 15	AB6	B	611	615	Right-handed 310
Helix 16	AB7	B	618	622	Right-handed 310
Helix 17	AB8	B	627	636	Right-handed alpha
Helix 18	AB9	B	638	656	Right-handed alpha
Helix 19	AC1	B	657	659	Right-handed 310
Helix 20	AC2	L	79	83	Right-handed 310
Helix 21	AC3	H	61	64	Right-handed 310
Helix 22	AC4	H	83	87	Right-handed 310
Helix 23	AC5	C	67	72	Right-handed alpha
Helix 24	AC6	C	98	116	Right-handed alpha
Helix 25	AC7	C	122	126	Right-handed 310
Helix 26	AC8	C	139	151	Right-handed 310
Helix 27	AC9	C	334	351	Right-handed alpha
Helix 28	AD1	C	368	373	Right-handed alpha
Helix 29	AD2	C	387	391	Right-handed 310
Helix 30	AD3	C	474	479	Right-handed 310
Helix 31	AD4	C	482	484	Right-handed 310
Helix 32	AD5	E	523	528	Right-handed 310
Helix 33	AD6	E	531	535	Right-handed 310
Helix 34	AD7	E	536	542	Right-handed alpha
Helix 35	AD8	E	563	568	Right-handed alpha
Helix 36	AD9	E	570	596	Right-handed alpha
Helix 37	AE1	E	611	615	Right-handed 310
Helix 38	AE2	E	618	622	Right-handed 310
Helix 39	AE3	E	627	636	Right-handed alpha
Helix 40	AE4	E	638	656	Right-handed alpha
Helix 41	AE5	E	657	659	Right-handed 310
Helix 42	AE6	J	79	83	Right-handed 310
Helix 43	AE7	G	61	64	Right-handed 310
Helix 44	AE8	G	83	87	Right-handed 310
Helix 45	AE9	D	67	72	Right-handed alpha
Helix 46	AF1	D	98	116	Right-handed alpha
Helix 47	AF2	D	122	126	Right-handed 310
Helix 48	AF3	D	139	151	Right-handed 310
Helix 49	AF4	D	334	351	Right-handed alpha
Helix 50	AF5	D	368	373	Right-handed alpha
Helix 51	AF6	D	387	391	Right-handed 310
Helix 52	AF7	D	474	479	Right-handed 310
Helix 53	AF8	D	482	484	Right-handed 310
Helix 54	AF9	F	523	528	Right-handed 310
Helix 55	AG1	F	531	535	Right-handed 310
Helix 56	AG2	F	536	542	Right-handed alpha
Helix 57	AG3	F	563	568	Right-handed alpha
Helix 58	AG4	F	570	596	Right-handed alpha
Helix 59	AG5	F	611	615	Right-handed 310
Helix 60	AG6	F	618	622	Right-handed 310
Helix 61	AG7	F	627	636	Right-handed alpha
Helix 62	AG8	F	638	656	Right-handed alpha
Helix 63	AG9	F	657	659	Right-handed 310
Helix 64	AH1	K	79	83	Right-handed 310
Helix 65	AH2	I	61	64	Right-handed 310
Helix 66	AH3	I	83	87	Right-handed 310

There are 48 sheets in PDB entry 6VKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	497	first strand
Strand 2	A	37	40	anti-parallel
Strand 3	B	603	604	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	456	anti-parallel
Strand 3	A	283	312	anti-parallel
Strand 4	A	330	333	anti-parallel
Strand 5	A	414	421	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	283	312	anti-parallel
Strand 3	A	441	456	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	456	anti-parallel
Strand 3	A	283	312	anti-parallel
Strand 4	A	315	323	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	283	312	anti-parallel
Strand 3	A	315	323	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	97	anti-parallel
Strand 4	H	35	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	97	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	497	first strand
Strand 2	C	37	40	anti-parallel
Strand 3	E	603	604	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	216	218	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	177	first strand
Strand 2	C	154	162	anti-parallel
Strand 3	C	129	132	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	432	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	441	456	anti-parallel
Strand 3	C	283	312	anti-parallel
Strand 4	C	330	333	anti-parallel
Strand 5	C	414	421	anti-parallel
Strand 6	C	381	385	anti-parallel
Strand 7	C	374	378	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	283	312	anti-parallel
Strand 3	C	441	456	anti-parallel
Strand 4	C	465	470	anti-parallel
Strand 5	C	358	361	parallel
Strand 6	C	393	395	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	441	456	anti-parallel
Strand 3	C	283	312	anti-parallel
Strand 4	C	315	323	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	283	312	anti-parallel
Strand 3	C	315	323	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	62	67	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	102	106	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	33	38	anti-parallel
Strand 5	J	45	49	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	102	106	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	97	98	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	97	anti-parallel
Strand 4	G	35	40	anti-parallel
Strand 5	G	44	51	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	97	anti-parallel
Strand 4	G	100	103	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	497	first strand
Strand 2	D	37	40	anti-parallel
Strand 3	F	603	604	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	486	491	anti-parallel
Strand 3	D	223	228	anti-parallel
Strand 4	D	242	245	anti-parallel
Strand 5	D	84	85	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	216	218	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	236	239	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	177	first strand
Strand 2	D	154	162	anti-parallel
Strand 3	D	129	132	anti-parallel
Strand 4	D	190	193	anti-parallel
Strand 5	D	181	183	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	203	first strand
Strand 2	D	432	435	parallel
Strand 3	D	423	424	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	441	456	anti-parallel
Strand 3	D	283	312	anti-parallel
Strand 4	D	330	333	anti-parallel
Strand 5	D	414	421	anti-parallel
Strand 6	D	381	385	anti-parallel
Strand 7	D	374	378	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	283	312	anti-parallel
Strand 3	D	441	456	anti-parallel
Strand 4	D	465	470	anti-parallel
Strand 5	D	358	361	parallel
Strand 6	D	393	395	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	441	456	anti-parallel
Strand 3	D	283	312	anti-parallel
Strand 4	D	315	323	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	283	312	anti-parallel
Strand 3	D	315	323	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	84	90	anti-parallel
Strand 4	K	33	38	anti-parallel
Strand 5	K	45	49	anti-parallel
Strand 6	K	53	54	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	84	90	anti-parallel
Strand 4	K	97	98	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	97	anti-parallel
Strand 4	I	35	40	anti-parallel
Strand 5	I	44	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	97	anti-parallel
Strand 4	I	100	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VKN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VKN