Analysis of interatomic Contacts of Structural Units in PDB entry:
6VKO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VKO entry

There are 4 chains in PDB entry 6VKO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 664	THR 1011
B	LYS 664	THR 1011
C	LYS 664	THR 1011
D	LYS 664	PRO 915

There are 59 helices in PDB entry 6VKO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	666	677	Right-handed alpha
Helix 2	AA2	A	678	689	Right-handed alpha
Helix 3	AA3	A	702	716	Right-handed alpha
Helix 4	AA4	A	717	720	Right-handed 310
Helix 5	AA5	A	725	736	Right-handed alpha
Helix 6	AA6	A	756	780	Right-handed alpha
Helix 7	AA7	A	791	796	Right-handed alpha
Helix 8	AA8	A	808	821	Right-handed alpha
Helix 9	AA9	A	843	853	Right-handed alpha
Helix 10	AB1	A	865	867	Right-handed 310
Helix 11	AB2	A	868	876	Right-handed alpha
Helix 12	AB3	A	900	906	Right-handed alpha
Helix 13	AB4	A	907	909	Right-handed 310
Helix 14	AB5	A	993	995	Right-handed 310
Helix 15	AB6	B	666	677	Right-handed alpha
Helix 16	AB7	B	678	689	Right-handed alpha
Helix 17	AB8	B	702	716	Right-handed alpha
Helix 18	AB9	B	717	720	Right-handed 310
Helix 19	AC1	B	725	736	Right-handed alpha
Helix 20	AC2	B	756	780	Right-handed alpha
Helix 21	AC3	B	791	796	Right-handed alpha
Helix 22	AC4	B	808	821	Right-handed alpha
Helix 23	AC5	B	843	853	Right-handed alpha
Helix 24	AC6	B	865	867	Right-handed 310
Helix 25	AC7	B	868	876	Right-handed alpha
Helix 26	AC8	B	900	906	Right-handed alpha
Helix 27	AC9	B	907	909	Right-handed 310
Helix 28	AD1	B	958	960	Right-handed 310
Helix 29	AD2	B	993	995	Right-handed 310
Helix 30	AD3	C	666	677	Right-handed alpha
Helix 31	AD4	C	678	689	Right-handed alpha
Helix 32	AD5	C	702	716	Right-handed alpha
Helix 33	AD6	C	717	720	Right-handed 310
Helix 34	AD7	C	725	736	Right-handed alpha
Helix 35	AD8	C	756	780	Right-handed alpha
Helix 36	AD9	C	791	796	Right-handed alpha
Helix 37	AE1	C	808	821	Right-handed alpha
Helix 38	AE2	C	843	853	Right-handed alpha
Helix 39	AE3	C	865	867	Right-handed 310
Helix 40	AE4	C	868	876	Right-handed alpha
Helix 41	AE5	C	900	906	Right-handed alpha
Helix 42	AE6	C	907	909	Right-handed 310
Helix 43	AE7	C	958	960	Right-handed 310
Helix 44	AE8	C	993	995	Right-handed 310
Helix 45	AE9	D	666	677	Right-handed alpha
Helix 46	AF1	D	678	689	Right-handed alpha
Helix 47	AF2	D	702	716	Right-handed alpha
Helix 48	AF3	D	717	720	Right-handed 310
Helix 49	AF4	D	725	736	Right-handed alpha
Helix 50	AF5	D	756	780	Right-handed alpha
Helix 51	AF6	D	791	796	Right-handed alpha
Helix 52	AF7	D	808	821	Right-handed alpha
Helix 53	AF8	D	843	853	Right-handed alpha
Helix 54	AF9	D	865	867	Right-handed 310
Helix 55	AG1	D	868	876	Right-handed alpha
Helix 56	AG2	D	900	906	Right-handed alpha
Helix 57	AG3	D	907	909	Right-handed 310
Helix 58	AG4	D	958	961	Right-handed 310
Helix 59	AG5	D	993	995	Right-handed 310

There are 16 sheets in PDB entry 6VKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	804	first strand
Strand 2	A	829	841	anti-parallel
Strand 3	A	997	1009	anti-parallel
Strand 4	A	916	925	anti-parallel
Strand 5	A	857	864	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	897	first strand
Strand 2	A	988	991	anti-parallel
Strand 3	A	947	950	anti-parallel
Strand 4	A	929	932	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	974	976	first strand
Strand 2	A	952	956	anti-parallel
Strand 3	A	984	986	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	967	969	first strand
Strand 2	A	962	964	anti-parallel
Strand 3	B	937	940	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	804	first strand
Strand 2	B	829	841	anti-parallel
Strand 3	B	997	1009	anti-parallel
Strand 4	B	916	925	anti-parallel
Strand 5	B	857	864	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	897	first strand
Strand 2	B	988	991	anti-parallel
Strand 3	B	947	950	anti-parallel
Strand 4	B	929	930	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	976	first strand
Strand 2	B	952	956	anti-parallel
Strand 3	B	984	986	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	967	969	first strand
Strand 2	B	962	964	anti-parallel
Strand 3	C	937	940	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	799	804	first strand
Strand 2	C	829	841	anti-parallel
Strand 3	C	997	1009	anti-parallel
Strand 4	C	916	925	anti-parallel
Strand 5	C	857	864	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	895	897	first strand
Strand 2	C	988	991	anti-parallel
Strand 3	C	947	950	anti-parallel
Strand 4	C	929	930	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	974	976	first strand
Strand 2	C	952	956	anti-parallel
Strand 3	C	984	986	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	967	969	first strand
Strand 2	C	962	964	anti-parallel
Strand 3	D	937	940	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	804	first strand
Strand 2	D	829	841	anti-parallel
Strand 3	D	997	1009	anti-parallel
Strand 4	D	916	925	anti-parallel
Strand 5	D	857	864	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	895	897	first strand
Strand 2	D	988	991	anti-parallel
Strand 3	D	947	950	anti-parallel
Strand 4	D	929	932	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	974	976	first strand
Strand 2	D	952	956	anti-parallel
Strand 3	D	984	986	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	962	964	first strand
Strand 2	D	967	969	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VKO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VKO