Analysis of interatomic Contacts of Structural Units in PDB entry:
6VKS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VKS entry

There are 3 chains in PDB entry 6VKS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	MET 1049
B	MET 1	PHE 1040
C	MET 1	GLU 1042

There are109 helices in PDB entry 6VKS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	29	Right-handed alpha
Helix 2	AA2	A	53	69	Right-handed alpha
Helix 3	AA3	A	100	113	Right-handed alpha
Helix 4	AA4	A	114	118	Right-handed 310
Helix 5	AA5	A	119	126	Right-handed alpha
Helix 6	AA6	A	148	160	Right-handed alpha
Helix 7	AA7	A	160	165	Right-handed alpha
Helix 8	AA8	A	187	192	Right-handed alpha
Helix 9	AA9	A	197	209	Right-handed alpha
Helix 10	AB1	A	240	245	Right-handed alpha
Helix 11	AB2	A	259	263	Right-handed alpha
Helix 12	AB3	A	298	311	Right-handed alpha
Helix 13	AB4	A	327	358	Right-handed alpha
Helix 14	AB5	A	359	364	Right-handed alpha
Helix 15	AB6	A	365	384	Right-handed alpha
Helix 16	AB7	A	389	422	Right-handed alpha
Helix 17	AB8	A	424	452	Right-handed alpha
Helix 18	AB9	A	453	456	Right-handed 310
Helix 19	AC1	A	461	494	Right-handed alpha
Helix 20	AC2	A	508	533	Right-handed alpha
Helix 21	AC3	A	536	554	Right-handed alpha
Helix 22	AC4	A	580	596	Right-handed alpha
Helix 23	AC5	A	638	653	Right-handed alpha
Helix 24	AC6	A	667	671	Right-handed 310
Helix 25	AC7	A	688	704	Right-handed alpha
Helix 26	AC8	A	729	734	Right-handed alpha
Helix 27	AC9	A	740	751	Right-handed alpha
Helix 28	AD1	A	833	847	Right-handed alpha
Helix 29	AD2	A	858	864	Right-handed alpha
Helix 30	AD3	A	869	890	Right-handed alpha
Helix 31	AD4	A	893	899	Right-handed alpha
Helix 32	AD5	A	902	920	Right-handed alpha
Helix 33	AD6	A	932	958	Right-handed alpha
Helix 34	AD7	A	968	990	Right-handed alpha
Helix 35	AD8	A	993	999	Right-handed alpha
Helix 36	AD9	A	1004	1041	Right-handed alpha
Helix 37	AE1	B	8	28	Right-handed alpha
Helix 38	AE2	B	53	67	Right-handed alpha
Helix 39	AE3	B	99	115	Right-handed alpha
Helix 40	AE4	B	116	118	Right-handed 310
Helix 41	AE5	B	119	126	Right-handed alpha
Helix 42	AE6	B	148	160	Right-handed alpha
Helix 43	AE7	B	160	165	Right-handed alpha
Helix 44	AE8	B	187	194	Right-handed alpha
Helix 45	AE9	B	198	208	Right-handed alpha
Helix 46	AF1	B	240	245	Right-handed alpha
Helix 47	AF2	B	297	313	Right-handed alpha
Helix 48	AF3	B	328	357	Right-handed alpha
Helix 49	AF4	B	363	384	Right-handed alpha
Helix 50	AF5	B	389	399	Right-handed alpha
Helix 51	AF6	B	399	421	Right-handed alpha
Helix 52	AF7	B	424	452	Right-handed alpha
Helix 53	AF8	B	453	457	Right-handed 310
Helix 54	AF9	B	459	494	Right-handed alpha
Helix 55	AG1	B	508	532	Right-handed alpha
Helix 56	AG2	B	534	555	Right-handed alpha
Helix 57	AG3	B	580	596	Right-handed alpha
Helix 58	AG4	B	638	654	Right-handed alpha
Helix 59	AG5	B	688	704	Right-handed alpha
Helix 60	AG6	B	729	735	Right-handed alpha
Helix 61	AG7	B	740	751	Right-handed alpha
Helix 62	AG8	B	833	847	Right-handed alpha
Helix 63	AG9	B	859	864	Right-handed alpha
Helix 64	AH1	B	870	890	Right-handed alpha
Helix 65	AH2	B	893	899	Right-handed alpha
Helix 66	AH3	B	901	923	Right-handed alpha
Helix 67	AH4	B	932	959	Right-handed alpha
Helix 68	AH5	B	966	998	Right-handed alpha
Helix 69	AH6	B	1003	1040	Right-handed alpha
Helix 70	AH7	C	3	8	Right-handed alpha
Helix 71	AH8	C	8	28	Right-handed alpha
Helix 72	AH9	C	55	61	Right-handed alpha
Helix 73	AI1	C	61	69	Right-handed alpha
Helix 74	AI2	C	99	112	Right-handed alpha
Helix 75	AI3	C	113	115	Right-handed 310
Helix 76	AI4	C	121	126	Right-handed alpha
Helix 77	AI5	C	148	159	Right-handed alpha
Helix 78	AI6	C	159	166	Right-handed alpha
Helix 79	AI7	C	187	195	Right-handed alpha
Helix 80	AI8	C	197	208	Right-handed alpha
Helix 81	AI9	C	240	245	Right-handed alpha
Helix 82	AJ1	C	298	312	Right-handed alpha
Helix 83	AJ2	C	313	315	Right-handed 310
Helix 84	AJ3	C	330	358	Right-handed alpha
Helix 85	AJ4	C	359	384	Right-handed alpha
Helix 86	AJ5	C	389	401	Right-handed alpha
Helix 87	AJ6	C	404	416	Right-handed alpha
Helix 88	AJ7	C	416	421	Right-handed alpha
Helix 89	AJ8	C	424	436	Right-handed alpha
Helix 90	AJ9	C	438	449	Right-handed alpha
Helix 91	AK1	C	452	456	Right-handed 310
Helix 92	AK2	C	459	494	Right-handed alpha
Helix 93	AK3	C	508	532	Right-handed alpha
Helix 94	AK4	C	536	555	Right-handed alpha
Helix 95	AK5	C	580	596	Right-handed alpha
Helix 96	AK6	C	638	654	Right-handed alpha
Helix 97	AK7	C	688	703	Right-handed alpha
Helix 98	AK8	C	729	737	Right-handed alpha
Helix 99	AK9	C	739	750	Right-handed alpha
Helix 100	AL1	C	780	785	Right-handed alpha
Helix 101	AL2	C	797	801	Right-handed alpha
Helix 102	AL3	C	833	846	Right-handed alpha
Helix 103	AL4	C	858	866	Right-handed alpha
Helix 104	AL5	C	868	889	Right-handed alpha
Helix 105	AL6	C	893	899	Right-handed alpha
Helix 106	AL7	C	901	924	Right-handed alpha
Helix 107	AL8	C	932	962	Right-handed alpha
Helix 108	AL9	C	966	998	Right-handed alpha
Helix 109	AM1	C	1004	1040	Right-handed alpha

There are 21 sheets in PDB entry 6VKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	812	816	anti-parallel
Strand 6	A	819	820	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	A	132	141	anti-parallel
Strand 4	A	322	326	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	180	186	anti-parallel
Strand 3	A	764	772	parallel
Strand 4	A	755	761	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	230	232	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	276	279	anti-parallel
Strand 3	A	601	610	anti-parallel
Strand 4	A	615	626	anti-parallel
Strand 5	A	568	574	anti-parallel
Strand 6	A	661	662	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	680	first strand
Strand 2	A	822	826	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	809	first strand
Strand 2	A	721	725	anti-parallel
Strand 3	C	231	233	parallel
Strand 4	C	215	216	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	87	94	anti-parallel
Strand 3	B	42	44	anti-parallel
Strand 4	B	130	131	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	87	94	anti-parallel
Strand 3	B	75	83	anti-parallel
Strand 4	B	812	816	anti-parallel
Strand 5	B	819	820	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	287	291	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	320	322	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	269	first strand
Strand 2	B	181	186	anti-parallel
Strand 3	B	764	770	parallel
Strand 4	B	754	761	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	230	234	anti-parallel
Strand 3	C	721	728	parallel
Strand 4	C	802	809	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	276	279	anti-parallel
Strand 3	B	601	608	anti-parallel
Strand 4	B	619	626	anti-parallel
Strand 5	B	568	574	anti-parallel
Strand 6	B	658	662	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	682	first strand
Strand 2	B	852	853	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	723	first strand
Strand 2	B	807	809	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	93	anti-parallel
Strand 4	C	77	83	anti-parallel
Strand 5	C	812	816	anti-parallel
Strand 6	C	819	826	anti-parallel
Strand 7	C	714	715	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	93	anti-parallel
Strand 4	C	77	83	anti-parallel
Strand 5	C	812	816	anti-parallel
Strand 6	C	819	826	anti-parallel
Strand 7	C	676	681	anti-parallel
Strand 8	C	854	855	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	173	first strand
Strand 2	C	285	291	anti-parallel
Strand 3	C	138	143	anti-parallel
Strand 4	C	320	326	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	270	first strand
Strand 2	C	180	186	anti-parallel
Strand 3	C	764	772	parallel
Strand 4	C	754	761	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	257	258	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	276	279	anti-parallel
Strand 3	C	601	608	anti-parallel
Strand 4	C	620	626	anti-parallel
Strand 5	C	568	574	anti-parallel
Strand 6	C	658	662	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VKS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VKS