Analysis of interatomic Contacts of Structural Units in PDB entry:
6VL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VL1 entry

There is 1 chain in PDB entry 6VL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 46VAL 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6VL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 59Right-handed alpha
Helix 2
AA2
A
65 79Right-handed alpha
Helix 3
AA3
A
80 83Right-handed 310
Helix 4
AA4
A
113 120Right-handed alpha
Helix 5
AA5
A
120 126Right-handed alpha
Helix 6
AA6
A
131 139Right-handed alpha
Helix 7
AA7
A
139 148Right-handed alpha
Helix 8
AA8
A
152 174Right-handed alpha
Helix 9
AA9
A
175 178Right-handed 310
Helix 10
AB1
A
179 183Right-handed 310
Helix 11
AB2
A
184 204Right-handed alpha
Helix 12
AB3
A
210 221Right-handed alpha
Helix 13
AB4
A
222 226Right-handed 310
Helix 14
AB5
A
239 242Right-handed 310
Helix 15
AB6
A
248 263Right-handed alpha
Helix 16
AB7
A
269 292Right-handed alpha
Helix 17
AB8
A
298 310Right-handed alpha
Helix 18
AB9
A
311 321Right-handed alpha
Helix 19
AC1
A
327 332Right-handed 310
Helix 20
AC2
A
333 355Right-handed alpha
Helix 21
AC3
A
355 362Right-handed alpha
Helix 22
AC4
A
367 376Right-handed alpha
Helix 23
AC5
A
380 409Right-handed alpha
Helix 24
AC6
A
412 439Right-handed alpha
Helix 25
AC7
A
450 472Right-handed alpha
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There are 2 sheets in PDB entry 6VL1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 93first strand
Strand 2
A
96 103anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
234 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il