Analysis of interatomic Contacts of Structural Units in PDB entry:
6VL5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VL5 entry

There are 6 chains in PDB entry 6VL5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASN 33	VAL 506
D	LEU 520	LEU 661
A	ASN 33	VAL 506
B	LEU 520	LEU 661
E	ASN 33	VAL 506
F	LEU 520	LEU 661

There are 48 helices in PDB entry 6VL5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	67	73	Right-handed alpha
Helix 2	AA2	C	99	117	Right-handed alpha
Helix 3	AA3	C	122	126	Right-handed 310
Helix 4	AA4	C	335	354	Right-handed alpha
Helix 5	AA5	C	368	373	Right-handed alpha
Helix 6	AA6	C	387	391	Right-handed 310
Helix 7	AA7	C	425	429	Right-handed 310
Helix 8	AA8	C	475	484	Right-handed alpha
Helix 9	AA9	D	529	535	Right-handed alpha
Helix 10	AB1	D	537	542	Right-handed alpha
Helix 11	AB2	D	543	544	Right-handed 310
Helix 12	AB3	D	545	549	Right-handed 310
Helix 13	AB4	D	569	596	Right-handed alpha
Helix 14	AB5	D	618	625	Right-handed alpha
Helix 15	AB6	D	627	636	Right-handed alpha
Helix 16	AB7	D	638	661	Right-handed alpha
Helix 17	AB8	A	67	73	Right-handed alpha
Helix 18	AB9	A	99	117	Right-handed alpha
Helix 19	AC1	A	122	126	Right-handed 310
Helix 20	AC2	A	335	354	Right-handed alpha
Helix 21	AC3	A	368	373	Right-handed alpha
Helix 22	AC4	A	387	391	Right-handed 310
Helix 23	AC5	A	425	429	Right-handed 310
Helix 24	AC6	A	475	484	Right-handed alpha
Helix 25	AC7	B	529	535	Right-handed alpha
Helix 26	AC8	B	537	542	Right-handed alpha
Helix 27	AC9	B	543	544	Right-handed 310
Helix 28	AD1	B	545	549	Right-handed 310
Helix 29	AD2	B	569	596	Right-handed alpha
Helix 30	AD3	B	618	625	Right-handed alpha
Helix 31	AD4	B	627	636	Right-handed alpha
Helix 32	AD5	B	638	661	Right-handed alpha
Helix 33	AD6	E	67	73	Right-handed alpha
Helix 34	AD7	E	99	117	Right-handed alpha
Helix 35	AD8	E	122	126	Right-handed 310
Helix 36	AD9	E	335	354	Right-handed alpha
Helix 37	AE1	E	368	373	Right-handed alpha
Helix 38	AE2	E	387	391	Right-handed 310
Helix 39	AE3	E	425	429	Right-handed 310
Helix 40	AE4	E	475	484	Right-handed alpha
Helix 41	AE5	F	529	535	Right-handed alpha
Helix 42	AE6	F	537	542	Right-handed alpha
Helix 43	AE7	F	543	544	Right-handed 310
Helix 44	AE8	F	545	549	Right-handed 310
Helix 45	AE9	F	569	596	Right-handed alpha
Helix 46	AF1	F	618	625	Right-handed alpha
Helix 47	AF2	F	627	636	Right-handed alpha
Helix 48	AF3	F	638	661	Right-handed alpha

There are 33 sheets in PDB entry 6VL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	D	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	215	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	177	first strand
Strand 2	C	154	162	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	189	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	433	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	441	456	anti-parallel
Strand 3	C	284	308	anti-parallel
Strand 4	C	271	273	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	308	anti-parallel
Strand 3	C	316	323	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	323	first strand
Strand 2	C	284	308	anti-parallel
Strand 3	C	329	334	anti-parallel
Strand 4	C	413	420	anti-parallel
Strand 5	C	381	385	anti-parallel
Strand 6	C	374	378	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	378	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	413	420	anti-parallel
Strand 4	C	329	334	anti-parallel
Strand 5	C	284	308	anti-parallel
Strand 6	C	441	456	anti-parallel
Strand 7	C	465	470	anti-parallel
Strand 8	C	358	361	parallel
Strand 9	C	394	396	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	358	361	anti-parallel
Strand 3	C	465	470	parallel
Strand 4	C	441	456	anti-parallel
Strand 5	C	259	261	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	215	218	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	189	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	456	anti-parallel
Strand 3	A	284	308	anti-parallel
Strand 4	A	271	273	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	308	anti-parallel
Strand 3	A	316	323	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	323	first strand
Strand 2	A	284	308	anti-parallel
Strand 3	A	329	334	anti-parallel
Strand 4	A	413	420	anti-parallel
Strand 5	A	381	385	anti-parallel
Strand 6	A	374	378	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	329	334	anti-parallel
Strand 5	A	284	308	anti-parallel
Strand 6	A	441	456	anti-parallel
Strand 7	A	465	470	anti-parallel
Strand 8	A	358	361	parallel
Strand 9	A	394	396	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	358	361	anti-parallel
Strand 3	A	465	470	parallel
Strand 4	A	441	456	anti-parallel
Strand 5	A	259	261	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	85	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	215	218	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	177	first strand
Strand 2	E	154	162	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	189	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	203	first strand
Strand 2	E	433	435	parallel
Strand 3	E	423	424	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	441	456	anti-parallel
Strand 3	E	284	308	anti-parallel
Strand 4	E	271	273	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	308	anti-parallel
Strand 3	E	316	323	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	316	323	first strand
Strand 2	E	284	308	anti-parallel
Strand 3	E	329	334	anti-parallel
Strand 4	E	413	420	anti-parallel
Strand 5	E	381	385	anti-parallel
Strand 6	E	374	378	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	378	first strand
Strand 2	E	381	385	anti-parallel
Strand 3	E	413	420	anti-parallel
Strand 4	E	329	334	anti-parallel
Strand 5	E	284	308	anti-parallel
Strand 6	E	441	456	anti-parallel
Strand 7	E	465	470	anti-parallel
Strand 8	E	358	361	parallel
Strand 9	E	394	396	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	394	396	first strand
Strand 2	E	358	361	anti-parallel
Strand 3	E	465	470	parallel
Strand 4	E	441	456	anti-parallel
Strand 5	E	259	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VL5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VL5