Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VLB entry

There are 2 chains in PDB entry 6VLB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 371
B
 MET 1ARG 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6VLB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
39 51Right-handed alpha
Helix 3
AA3
A
66 86Right-handed alpha
Helix 4
AA4
A
96 109Right-handed alpha
Helix 5
AA5
A
130 142Right-handed alpha
Helix 6
AA6
A
149 158Right-handed alpha
Helix 7
AA7
A
162 164Right-handed 310
Helix 8
AA8
A
171 184Right-handed alpha
Helix 9
AA9
A
186 197Right-handed alpha
Helix 10
AB1
A
213 217Right-handed 310
Helix 11
AB2
A
218 235Right-handed alpha
Helix 12
AB3
A
247 259Right-handed alpha
Helix 13
AB4
A
271 281Right-handed alpha
Helix 14
AB5
A
291 296Right-handed alpha
Helix 15
AB6
A
297 300Right-handed 310
Helix 16
AB7
A
312 319Right-handed alpha
Helix 17
AB8
A
327 341Right-handed alpha
Helix 18
AB9
A
341 350Right-handed alpha
Helix 19
AC1
A
359 371Right-handed alpha
Helix 20
AC2
B
9 24Right-handed alpha
Helix 21
AC3
B
40 51Right-handed alpha
Helix 22
AC4
B
66 86Right-handed alpha
Helix 23
AC5
B
96 109Right-handed alpha
Helix 24
AC6
B
130 142Right-handed alpha
Helix 25
AC7
B
149 158Right-handed alpha
Helix 26
AC8
B
162 164Right-handed 310
Helix 27
AC9
B
171 184Right-handed alpha
Helix 28
AD1
B
186 197Right-handed alpha
Helix 29
AD2
B
213 217Right-handed 310
Helix 30
AD3
B
218 235Right-handed alpha
Helix 31
AD4
B
247 259Right-handed alpha
Helix 32
AD5
B
271 281Right-handed alpha
Helix 33
AD6
B
290 296Right-handed alpha
Helix 34
AD7
B
297 300Right-handed 310
Helix 35
AD8
B
312 319Right-handed alpha
Helix 36
AD9
B
327 341Right-handed alpha
Helix 37
AE1
B
341 350Right-handed alpha
Helix 38
AE2
B
359 371Right-handed alpha
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There are 4 sheets in PDB entry 6VLB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
30 35parallel
Strand 3
A
2 7parallel
Strand 4
A
89 93parallel
Strand 5
A
113 116parallel
Strand 6
A
144 147parallel
Strand 7
A
166 168parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
238 243parallel
Strand 3
A
205 210parallel
Strand 4
A
282 287parallel
Strand 5
A
303 305parallel
Strand 6
A
321 323parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
30 35parallel
Strand 3
B
2 7parallel
Strand 4
B
89 93parallel
Strand 5
B
113 116parallel
Strand 6
B
144 147parallel
Strand 7
B
166 168parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
239 243parallel
Strand 3
B
206 210parallel
Strand 4
B
282 287parallel
Strand 5
B
303 305parallel
Strand 6
B
321 323parallel
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