Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VLC entry

There are 4 chains in PDB entry 6VLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 371
B
 MET 1ASN 371
C
 MET 1ASN 371
D
 MET 1SER 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 6VLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
40 51Right-handed alpha
Helix 3
AA3
A
66 86Right-handed alpha
Helix 4
AA4
A
96 109Right-handed alpha
Helix 5
AA5
A
130 142Right-handed alpha
Helix 6
AA6
A
149 159Right-handed alpha
Helix 7
AA7
A
162 164Right-handed 310
Helix 8
AA8
A
171 184Right-handed alpha
Helix 9
AA9
A
186 195Right-handed alpha
Helix 10
AB1
A
213 217Right-handed 310
Helix 11
AB2
A
218 235Right-handed alpha
Helix 12
AB3
A
247 259Right-handed alpha
Helix 13
AB4
A
271 281Right-handed alpha
Helix 14
AB5
A
289 300Right-handed alpha
Helix 15
AB6
A
312 318Right-handed alpha
Helix 16
AB7
A
327 341Right-handed alpha
Helix 17
AB8
A
341 350Right-handed alpha
Helix 18
AB9
A
359 371Right-handed alpha
Helix 19
AC1
B
9 24Right-handed alpha
Helix 20
AC2
B
40 50Right-handed alpha
Helix 21
AC3
B
66 86Right-handed alpha
Helix 22
AC4
B
96 109Right-handed alpha
Helix 23
AC5
B
130 142Right-handed alpha
Helix 24
AC6
B
149 159Right-handed alpha
Helix 25
AC7
B
162 164Right-handed 310
Helix 26
AC8
B
171 184Right-handed alpha
Helix 27
AC9
B
186 197Right-handed alpha
Helix 28
AD1
B
219 224Right-handed alpha
Helix 29
AD2
B
224 235Right-handed alpha
Helix 30
AD3
B
247 258Right-handed alpha
Helix 31
AD4
B
271 281Right-handed alpha
Helix 32
AD5
B
291 296Right-handed alpha
Helix 33
AD6
B
297 300Right-handed 310
Helix 34
AD7
B
312 319Right-handed alpha
Helix 35
AD8
B
327 341Right-handed alpha
Helix 36
AD9
B
341 350Right-handed alpha
Helix 37
AE1
B
359 370Right-handed alpha
Helix 38
AE2
C
9 24Right-handed alpha
Helix 39
AE3
C
40 50Right-handed alpha
Helix 40
AE4
C
66 86Right-handed alpha
Helix 41
AE5
C
96 109Right-handed alpha
Helix 42
AE6
C
130 142Right-handed alpha
Helix 43
AE7
C
149 159Right-handed alpha
Helix 44
AE8
C
162 164Right-handed 310
Helix 45
AE9
C
171 184Right-handed alpha
Helix 46
AF1
C
186 197Right-handed alpha
Helix 47
AF2
C
213 217Right-handed 310
Helix 48
AF3
C
218 235Right-handed alpha
Helix 49
AF4
C
247 259Right-handed alpha
Helix 50
AF5
C
271 281Right-handed alpha
Helix 51
AF6
C
289 300Right-handed alpha
Helix 52
AF7
C
312 318Right-handed alpha
Helix 53
AF8
C
327 341Right-handed alpha
Helix 54
AF9
C
341 349Right-handed alpha
Helix 55
AG1
C
359 370Right-handed alpha
Helix 56
AG2
D
9 24Right-handed alpha
Helix 57
AG3
D
40 51Right-handed alpha
Helix 58
AG4
D
66 86Right-handed alpha
Helix 59
AG5
D
96 109Right-handed alpha
Helix 60
AG6
D
130 142Right-handed alpha
Helix 61
AG7
D
149 159Right-handed alpha
Helix 62
AG8
D
162 164Right-handed 310
Helix 63
AG9
D
171 184Right-handed alpha
Helix 64
AH1
D
186 197Right-handed alpha
Helix 65
AH2
D
220 224Right-handed alpha
Helix 66
AH3
D
224 235Right-handed alpha
Helix 67
AH4
D
247 258Right-handed alpha
Helix 68
AH5
D
271 281Right-handed alpha
Helix 69
AH6
D
289 296Right-handed alpha
Helix 70
AH7
D
297 300Right-handed 310
Helix 71
AH8
D
312 319Right-handed alpha
Helix 72
AH9
D
327 341Right-handed alpha
Helix 73
AI1
D
341 350Right-handed alpha
Helix 74
AI2
D
359 370Right-handed alpha
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There are 8 sheets in PDB entry 6VLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
30 35parallel
Strand 3
A
2 7parallel
Strand 4
A
89 93parallel
Strand 5
A
113 116parallel
Strand 6
A
144 147parallel
Strand 7
A
166 168parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
239 243parallel
Strand 3
A
206 210parallel
Strand 4
A
282 287parallel
Strand 5
A
303 305parallel
Strand 6
A
321 323parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
30 35parallel
Strand 3
B
2 7parallel
Strand 4
B
89 93parallel
Strand 5
B
113 116parallel
Strand 6
B
144 147parallel
Strand 7
B
166 168parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
239 243parallel
Strand 3
B
206 210parallel
Strand 4
B
282 287parallel
Strand 5
B
303 305parallel
Strand 6
B
321 323parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
30 35parallel
Strand 3
C
2 7parallel
Strand 4
C
89 93parallel
Strand 5
C
113 116parallel
Strand 6
C
144 147parallel
Strand 7
C
166 168parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 267first strand
Strand 2
C
239 243parallel
Strand 3
C
206 210parallel
Strand 4
C
282 287parallel
Strand 5
C
303 305parallel
Strand 6
C
321 323parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
30 35parallel
Strand 3
D
2 7parallel
Strand 4
D
89 93parallel
Strand 5
D
113 116parallel
Strand 6
D
144 147parallel
Strand 7
D
166 168parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
264 267first strand
Strand 2
D
239 243parallel
Strand 3
D
206 210parallel
Strand 4
D
282 287parallel
Strand 5
D
303 305parallel
Strand 6
D
321 323parallel
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