Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VLD entry

There are 3 chains in PDB entry 6VLD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 107	ALA 573
B	GLY 107	LYS 575
G	GLY 107	LYS 401

There are 64 helices in PDB entry 6VLD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	109	138	Right-handed alpha
Helix 2	AA2	A	142	173	Right-handed alpha
Helix 3	AA3	A	175	200	Right-handed alpha
Helix 4	AA4	A	203	207	Right-handed 310
Helix 5	AA5	A	219	237	Right-handed alpha
Helix 6	AA6	A	254	258	Right-handed 310
Helix 7	AA7	A	281	286	Right-handed 310
Helix 8	AA8	A	293	297	Right-handed 310
Helix 9	AA9	A	310	320	Right-handed alpha
Helix 10	AB1	A	322	336	Right-handed alpha
Helix 11	AB2	A	339	354	Right-handed alpha
Helix 12	AB3	A	366	370	Right-handed 310
Helix 13	AB4	A	378	394	Right-handed alpha
Helix 14	AB5	A	412	421	Right-handed alpha
Helix 15	AB6	A	429	436	Right-handed alpha
Helix 16	AB7	A	443	460	Right-handed alpha
Helix 17	AB8	A	469	481	Right-handed alpha
Helix 18	AB9	B	109	138	Right-handed alpha
Helix 19	AC1	B	141	173	Right-handed alpha
Helix 20	AC2	B	175	200	Right-handed alpha
Helix 21	AC3	B	219	237	Right-handed alpha
Helix 22	AC4	B	254	258	Right-handed 310
Helix 23	AC5	B	293	297	Right-handed 310
Helix 24	AC6	B	310	320	Right-handed alpha
Helix 25	AC7	B	322	336	Right-handed alpha
Helix 26	AC8	B	339	354	Right-handed alpha
Helix 27	AC9	B	366	371	Right-handed 310
Helix 28	AD1	B	378	395	Right-handed alpha
Helix 29	AD2	B	412	421	Right-handed alpha
Helix 30	AD3	B	429	436	Right-handed alpha
Helix 31	AD4	B	443	460	Right-handed alpha
Helix 32	AD5	B	469	481	Right-handed alpha
Helix 33	AD6	B	570	575	Right-handed 310
Helix 34	AD7	G	109	138	Right-handed alpha
Helix 35	AD8	G	141	171	Right-handed alpha
Helix 36	AD9	G	172	174	Right-handed 310
Helix 37	AE1	G	175	200	Right-handed alpha
Helix 38	AE2	G	219	238	Right-handed alpha
Helix 39	AE3	G	254	258	Right-handed 310
Helix 40	AE4	G	293	297	Right-handed 310
Helix 41	AE5	G	312	320	Right-handed alpha
Helix 42	AE6	G	322	336	Right-handed alpha
Helix 43	AE7	G	339	354	Right-handed alpha
Helix 44	AE8	G	378	395	Right-handed alpha
Helix 45	AE9	G	412	421	Right-handed alpha
Helix 46	AF1	G	428	432	Right-handed 310
Helix 47	AF2	G	446	459	Right-handed alpha
Helix 48	AF3	G	469	481	Right-handed alpha
Helix 49	AF4	G	570	574	Right-handed 310
Helix 50	AF5	H	109	139	Right-handed alpha
Helix 51	AF6	H	141	173	Right-handed alpha
Helix 52	AF7	H	175	200	Right-handed alpha
Helix 53	AF8	H	219	238	Right-handed alpha
Helix 54	AF9	H	254	258	Right-handed 310
Helix 55	AG1	H	293	297	Right-handed 310
Helix 56	AG2	H	310	320	Right-handed alpha
Helix 57	AG3	H	322	336	Right-handed alpha
Helix 58	AG4	H	339	354	Right-handed alpha
Helix 59	AG5	H	378	395	Right-handed alpha
Helix 60	AG6	H	410	421	Right-handed alpha
Helix 61	AG7	H	428	432	Right-handed 310
Helix 62	AG8	H	447	460	Right-handed alpha
Helix 63	AG9	H	469	481	Right-handed alpha
Helix 64	AH1	H	570	575	Right-handed 310

There are 16 sheets in PDB entry 6VLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	209	213	parallel
Strand 3	A	288	290	parallel
Strand 4	A	274	276	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	564	565	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	427	first strand
Strand 2	A	402	408	parallel
Strand 3	A	359	364	parallel
Strand 4	A	462	465	parallel
Strand 5	A	490	492	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	554	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	528	534	anti-parallel
Strand 4	A	506	509	anti-parallel
Strand 5	A	558	560	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	209	213	parallel
Strand 3	B	288	290	parallel
Strand 4	B	274	276	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	564	565	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	427	first strand
Strand 2	B	402	408	parallel
Strand 3	B	359	364	parallel
Strand 4	B	462	465	parallel
Strand 5	B	490	492	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	554	first strand
Strand 2	B	539	544	anti-parallel
Strand 3	B	528	534	anti-parallel
Strand 4	B	506	509	anti-parallel
Strand 5	B	558	560	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	240	244	first strand
Strand 2	G	209	213	parallel
Strand 3	G	288	290	parallel
Strand 4	G	274	276	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	308	309	first strand
Strand 2	G	564	565	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	424	427	first strand
Strand 2	G	402	408	parallel
Strand 3	G	359	364	parallel
Strand 4	G	462	465	parallel
Strand 5	G	490	492	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	549	554	first strand
Strand 2	G	539	544	anti-parallel
Strand 3	G	528	534	anti-parallel
Strand 4	G	506	509	anti-parallel
Strand 5	G	558	560	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	240	244	first strand
Strand 2	H	209	213	parallel
Strand 3	H	288	290	parallel
Strand 4	H	274	276	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	308	309	first strand
Strand 2	H	564	565	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	424	427	first strand
Strand 2	H	402	408	parallel
Strand 3	H	359	364	parallel
Strand 4	H	462	465	parallel
Strand 5	H	490	492	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	549	554	first strand
Strand 2	H	539	544	anti-parallel
Strand 3	H	528	534	anti-parallel
Strand 4	H	506	509	anti-parallel
Strand 5	H	558	560	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VLD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLD