Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VLF entry

There are 2 chains in PDB entry 6VLF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 106LYS 575
B
 ASN 106LYS 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6VLF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 138Right-handed alpha
Helix 2
AA2
A
141 173Right-handed alpha
Helix 3
AA3
A
175 200Right-handed alpha
Helix 4
AA4
A
203 207Right-handed 310
Helix 5
AA5
A
219 238Right-handed alpha
Helix 6
AA6
A
254 258Right-handed 310
Helix 7
AA7
A
293 297Right-handed 310
Helix 8
AA8
A
310 318Right-handed alpha
Helix 9
AA9
A
322 336Right-handed alpha
Helix 10
AB1
A
339 354Right-handed alpha
Helix 11
AB2
A
378 395Right-handed alpha
Helix 12
AB3
A
412 421Right-handed alpha
Helix 13
AB4
A
428 432Right-handed 310
Helix 14
AB5
A
447 460Right-handed alpha
Helix 15
AB6
A
469 481Right-handed alpha
Helix 16
AB7
A
570 575Right-handed 310
Helix 17
AB8
B
109 138Right-handed alpha
Helix 18
AB9
B
141 173Right-handed alpha
Helix 19
AC1
B
175 200Right-handed alpha
Helix 20
AC2
B
203 207Right-handed 310
Helix 21
AC3
B
219 237Right-handed alpha
Helix 22
AC4
B
254 258Right-handed 310
Helix 23
AC5
B
293 297Right-handed 310
Helix 24
AC6
B
312 318Right-handed alpha
Helix 25
AC7
B
322 336Right-handed alpha
Helix 26
AC8
B
339 354Right-handed alpha
Helix 27
AC9
B
378 395Right-handed alpha
Helix 28
AD1
B
412 421Right-handed alpha
Helix 29
AD2
B
428 432Right-handed 310
Helix 30
AD3
B
447 460Right-handed alpha
Helix 31
AD4
B
469 480Right-handed alpha
Helix 32
AD5
B
570 575Right-handed 310
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There are 8 sheets in PDB entry 6VLF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
209 213parallel
Strand 3
A
288 290parallel
Strand 4
A
274 276parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
564 565parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
402 408parallel
Strand 3
A
359 364parallel
Strand 4
A
462 465parallel
Strand 5
A
490 492parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 554first strand
Strand 2
A
539 544anti-parallel
Strand 3
A
528 534anti-parallel
Strand 4
A
506 509anti-parallel
Strand 5
A
558 560anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 244first strand
Strand 2
B
209 213parallel
Strand 3
B
288 290parallel
Strand 4
B
274 276parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
564 565parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 427first strand
Strand 2
B
402 408parallel
Strand 3
B
360 364parallel
Strand 4
B
462 465parallel
Strand 5
B
490 492parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 554first strand
Strand 2
B
539 544anti-parallel
Strand 3
B
528 534anti-parallel
Strand 4
B
506 509anti-parallel
Strand 5
B
558 560anti-parallel
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