Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VLH entry

There are 4 chains in PDB entry 6VLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 56ASP 64
A
 THR 66ASP 207
B
 SER 56ASP 64
B
 THR 66ILE 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6VLH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 108Right-handed alpha
Helix 2
AA2
A
118 122Right-handed 310
Helix 3
AA3
A
123 134Right-handed alpha
Helix 4
AA4
A
154 166Right-handed alpha
Helix 5
AA5
A
167 169Right-handed 310
Helix 6
AA6
A
171 186Right-handed alpha
Helix 7
AA7
A
195 207Right-handed alpha
Helix 8
AA8
B
94 108Right-handed alpha
Helix 9
AA9
B
118 122Right-handed 310
Helix 10
AB1
B
123 134Right-handed alpha
Helix 11
AB2
B
156 167Right-handed alpha
Helix 12
AB3
B
171 186Right-handed alpha
Helix 13
AB4
B
195 208Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6VLH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
112 115parallel
Strand 5
A
136 139parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
112 115parallel
Strand 5
B
136 139parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il