Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VLK entry

There are 2 chains in PDB entry 6VLK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 115	GLN 736
B	LYS 116	GLN 736

There are 28 helices in PDB entry 6VLK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	199	206	Right-handed alpha
Helix 2	AA2	A	206	211	Right-handed alpha
Helix 3	AA3	A	231	233	Right-handed 310
Helix 4	AA4	A	312	316	Right-handed 310
Helix 5	AA5	A	321	323	Right-handed 310
Helix 6	AA6	A	363	367	Right-handed 310
Helix 7	AA7	A	408	412	Right-handed 310
Helix 8	AA8	A	416	434	Right-handed alpha
Helix 9	AA9	A	512	554	Right-handed alpha
Helix 10	AB1	A	557	566	Right-handed alpha
Helix 11	AB2	A	674	676	Right-handed 310
Helix 12	AB3	A	702	707	Right-handed alpha
Helix 13	AB4	A	713	722	Right-handed alpha
Helix 14	AB5	A	723	729	Right-handed alpha
Helix 15	AB6	B	199	206	Right-handed alpha
Helix 16	AB7	B	206	211	Right-handed alpha
Helix 17	AB8	B	231	233	Right-handed 310
Helix 18	AB9	B	312	316	Right-handed 310
Helix 19	AC1	B	321	323	Right-handed 310
Helix 20	AC2	B	363	367	Right-handed 310
Helix 21	AC3	B	408	412	Right-handed 310
Helix 22	AC4	B	416	434	Right-handed alpha
Helix 23	AC5	B	512	554	Right-handed alpha
Helix 24	AC6	B	557	567	Right-handed alpha
Helix 25	AC7	B	674	676	Right-handed 310
Helix 26	AC8	B	702	707	Right-handed alpha
Helix 27	AC9	B	713	722	Right-handed alpha
Helix 28	AD1	B	723	729	Right-handed alpha

There are 20 sheets in PDB entry 6VLK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	634	636	parallel
Strand 3	A	624	629	anti-parallel
Strand 4	A	613	618	anti-parallel
Strand 5	A	591	595	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	579	583	anti-parallel
Strand 3	A	570	574	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	388	393	anti-parallel
Strand 3	A	371	385	anti-parallel
Strand 4	A	148	158	anti-parallel
Strand 5	A	453	462	anti-parallel
Strand 6	A	438	440	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	388	393	anti-parallel
Strand 3	A	371	385	anti-parallel
Strand 4	A	148	158	anti-parallel
Strand 5	A	453	462	anti-parallel
Strand 6	A	445	449	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	197	first strand
Strand 2	A	163	181	anti-parallel
Strand 3	A	269	286	anti-parallel
Strand 4	A	293	295	anti-parallel
Strand 5	A	300	301	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	252	254	anti-parallel
Strand 3	A	269	286	anti-parallel
Strand 4	A	163	181	anti-parallel
Strand 5	A	356	360	anti-parallel
Strand 6	A	345	351	anti-parallel
Strand 7	A	325	331	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	237	239	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	221	first strand
Strand 2	A	224	229	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	609	first strand
Strand 2	A	642	644	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	655	first strand
Strand 2	A	658	663	anti-parallel
Strand 3	A	666	672	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	587	first strand
Strand 2	B	119	121	anti-parallel
Strand 3	B	634	636	parallel
Strand 4	B	624	629	anti-parallel
Strand 5	B	613	618	anti-parallel
Strand 6	B	591	595	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	579	583	anti-parallel
Strand 3	B	570	574	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	388	393	anti-parallel
Strand 3	B	371	385	anti-parallel
Strand 4	B	148	158	anti-parallel
Strand 5	B	453	462	anti-parallel
Strand 6	B	438	440	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	388	393	anti-parallel
Strand 3	B	371	385	anti-parallel
Strand 4	B	148	158	anti-parallel
Strand 5	B	453	462	anti-parallel
Strand 6	B	445	449	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	197	first strand
Strand 2	B	163	181	anti-parallel
Strand 3	B	269	286	anti-parallel
Strand 4	B	293	295	anti-parallel
Strand 5	B	300	301	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	252	254	anti-parallel
Strand 3	B	269	286	anti-parallel
Strand 4	B	163	181	anti-parallel
Strand 5	B	356	360	anti-parallel
Strand 6	B	345	351	anti-parallel
Strand 7	B	325	331	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	237	239	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	221	first strand
Strand 2	B	224	229	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	609	first strand
Strand 2	B	642	644	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	655	first strand
Strand 2	B	658	663	anti-parallel
Strand 3	B	666	672	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VLK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VLK